Job Description P60438 Confidence 100.00% Date Thu Jan 5 12:06:48 GMT 2012 Rank 4 Aligned Residues 206 % Identity 31% Template c2ftcC_ PDB info PDB header:ribosome Chain: C: PDB Molecule:mitochondrial 39s ribosomal protein l3; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome Resolution 12.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		I	G	L	V	G	K	K	V	G	M	T	R	I	F	T	E	D	G	V	S	I	P	V	T	V	I	E	V	E	A	N	R	V	T	Q	V	K	D	L	A	N	D	G	Y	R	A	I	Q	V	T	T	G	A	K	K	A	N	.	.	R	V	T	K	P	E	A	G	H	F	A	K	A	G	V	E	A	G	R	G	L
Query Conservation																																																											.	.
Alig confidence																																																											.	.
Template Conservation
Template Sequence		V	G	L	I	A	L	K	L	G	M	M	P	L	W	T	K	D	G	Q	K	H	V	V	T	L	L	Q	V	Q	D	C	H	V	L	K	Y	T	S	K	E	N	C	N	G	K	M	A	T	L	S	V	G	G	K	T	V	S	R	F	R	K	A	T	S	I	L	E	F	Y	R	E	L	G	L	P	P	K	Q	T	V
Template Known Secondary structure																	T	T	S																				T	T	T	T	S	S								S	S			S	S		S		S	S		S	S		S	S		S	S	S	S			S		S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	E	F	R	L	A	E	G	E	E	F	T	V	G	Q	S	I	S	V	E	L	F	A	D	V	K	K	V	D	V	T	G	T	S	K	G	K	G	F	A	G	T	V	K	R	W	N	F	R	T	Q	D	A	T	H	G	N	S	L	S	H	R	V	P	G	S	I	G	Q	N	Q	T	P	G	K	V	F	K	G	K
Query Conservation
Alig confidence																																																																							.
Template Conservation																																																																							.
Template Sequence		K	I	F	N	I	T	D	N	A	A	I	K	P	G	T	P	L	Y	A	A	H	F	R	P	G	Q	Y	V	D	V	T	A	K	T	I	G	K	G	F	Q	G	V	M	K	R	W	G	F	K	G	Q	P	A	T	H	G	Q	T	K	T	H	R	R	P	G	A	V	A	T	.	G	D	I	G	R	V	W	P	G	T
Template Known Secondary structure					S				S		S	T	T	T					S	S	S	S	S		S	S																	T	T	S	S		T	T						S	S	S		S		S	S		S	S				S	S	.	S	S	S					S	S
Template Predicted Secondary structure																																																																							.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	A	G	Q	M	G	N	E	R	V	T	V	Q	S	L	D	V	V	R	V	D	A	E	R	N	L	L	L	V	K	G	A	V	P	G	A	T	G	S	D	L	I	V	K	P	A	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	M	P	G	K	M	G	N	I	Y	R	T	E	Y	G	L	K	V	W	R	I	N	T	K	H	N	I	I	Y	V	N	G	S	V	P	G	H	K	N	C	L	V	K	V	K	D	S	K	L
Template Known Secondary structure								S	S							S								S	S	S						S	S				S		T	T							S		S	S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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