Job Description P60438 Confidence 8.14% Date Thu Jan 5 12:06:48 GMT 2012 Rank 48 Aligned Residues 43 % Identity 30% Template c1nfiC_ PDB info PDB header:complex (transcription reg/ank repeat) Chain: C: PDB Molecule:nf-kappa-b p65; PDBTitle: i-kappa-b-alpha/nf-kappa-b complex Resolution 2.70 Å

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		130	.	.	.	.	.	.	.	.	.	140						.	.	.	.	.	.		.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure													.	.	.	.	.							.							.
Query SS confidence													.	.	.	.	.							.							.
Query Sequence		Q	D	A	T	H	G	N	S	L	S	H	.	.	.	.	.	R	V	P	G	S	I	.	G	Q	N	Q	T	P	.	G	K	V	F	K	G	K	K	M	A	G	Q	M	G	N	E	R	V	T	V	Q
Query Conservation													.	.	.	.	.							.							.
Alig confidence								.					.	.	.	.	.							.							.
Template Conservation								.
Template Sequence		Q	P	K	Q	R	G	.	M	R	F	R	Y	K	C	E	G	R	S	A	G	S	I	P	G	E	R	S	T	D	T	T	K	T	H	P	T	I	K	I	N	G	Y	T	G	P	G	T	V	R	I	S
Template Known Secondary structure			B			S	S	.	B			B		T	T	S	S	S							B	T	T			S	S	S									T	T			S	S
Template Predicted Secondary structure								.
Template SS confidence
		26	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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