Job Description P60438 Confidence 13.59% Date Thu Jan 5 12:06:48 GMT 2012 Rank 28 Aligned Residues 33 % Identity 21% Template c1a3qA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:protein (nuclear factor kappa-b p52); PDBTitle: human nf-kappa-b p52 bound to dna Resolution 2.10 Å

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		141	.	.	.	.	.		.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure								.									.
Query SS confidence								.									.
Query Sequence		R	V	P	G	S	I	.	G	Q	N	Q	T	P	G	K	.	V	F	K	G	K	K	M	A	G	Q	M	G	N	E	R	V	T	V	Q
Query Conservation								.									.
Alig confidence								.									.
Template Conservation
Template Sequence		P	S	H	G	G	L	P	G	A	S	S	E	K	G	R	K	T	Y	P	T	V	K	I	C	N	Y	E	G	P	A	K	I	E	V	D
Template Known Secondary structure		S		S					B	S				T	T											T			S	S
Template Predicted Secondary structure
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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