 |
Job Description | P12281 | Confidence | 90.87% | Date | Thu Jan 5 11:33:06 GMT 2012 |
Rank | 42 | Aligned Residues | 112 |
% Identity | 20% | Template | d1pjca1 |
SCOP info | NAD(P)-binding Rossmann-fold domains
| NAD(P)-binding Rossmann-fold domains
| Formate/glycerate dehydrogenases, NAD-domain
|
Resolution | 2.00 |
|
 |
  |   |
175 | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 240 |
Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
I | R | K | V | R | V | A | L | F | S | T | G | D | E | L | Q | L | P | G | Q | P | L | G | D | G | Q | I | Y | D | T | N | R | L | A | V | H | L | M | L | E | Q | L | G | C | E | V | I | N | L | G | I | I | R | D | D | P | H | A | L | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | A | F | I | E | A |
Query Conservation |   |
  |   |   |
|
|
|   |
|
|
|
|
|
|
|
|   |   |   |
|   |   |   |   |   |
|   |
|   |
|
|
|
|   |   |
|   |
|   |
|   |   |   |
|   |   |
|   |   |   |   |   |
|   |
|
|   |   |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   |
|
|
|   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . |
| . | . | . | . |
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
Template Sequence |   |
V | K | P | G | K | V | V | I | L | G | G | G | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | . |
. |
. |
. |
G | T | E | A | A | K | M | A | V | G | L | G | A | Q | V | Q | I | F | D | I | N | V | E | R | L | S | Y | L | E | T | L | F | G | S | R | V | E | L | L | Y | S | N | S | A | E | I | E | T | A |
Template Known Secondary structure |   |
B |
|
|
|  |  |  |  |  |
|
| S |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  | G | G | G | S |  |  |  |  |
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
165 | . | . | . | . | 170 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | |
|
|
|
. | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . |
  |
  |   |
241 | . | . | . | . | . | . | . | . | 250 | . | . | . | . | |
|
. | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | |
270 | . | . | . | . | . | . | . | . | . | 280 | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |
|
|
|
| . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
| . |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | S | Q | A | D | V | V | I | S | S | G | G | V | S | . |
. |
V | G | E | A | D | Y | T | K | T | I | L | E | E | L | G | . |
E | I | A | F | W | K | L | A | I | K | P | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | P | F | A | F | G | K | L | S | N | S | W | F | C | G | L | P | G | N | P | V | S |
Query Conservation |   |
  |   |   |   |
|
|
|
|
|
|
|
|   |
| . | . |   |
|   |   |
|   |   |   |   |   |
|   |   |
|
| . |   |
|   |
|   |   |
|   |   |   |
|
| . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |
|   |   |
|
|   |
|
|
|
|
|
|
|
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
Template Sequence |   |
V | A | E | A | D | L | L | I | G | A | V | L | V | P | G | R | R | A | P | I | L | V | P | A | S | L | V | E | Q | M | R | T | G | S | V | I | V | D | V | A | V | D | Q | G | G | C | V | E | T | L | H | P | T | S | H | T | Q | P | T | Y | E | V | F | G | V | V | H | Y | G | V | P | N | M | P | G | A |
Template Known Secondary structure |   |
 |  | T |
| S |  |  |  |  |
|
|
|
| T | T | S | S |
|
|
|
| B |
|  |  |  |  | T | T | S |
| T | T |
|  |  |  |  | T | T |
| T | T |
|
| S | B | T | T |
|
|
|
|
| S | S | S |
|  |  |  |  | T | T |  |  |  |  |
|
| S |
| G | G | G |
|
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
228 | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|