Phyre 2 alignment of P12281 with d1e8ca2

Job Description P12281
Confidence 62.10% Date Thu Jan 5 11:33:06 GMT 2012

Rank 156 Aligned Residues 61

% Identity 16% Template d1e8ca2

SCOP info MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurCDEF C-terminal domain

Resolution 2.00

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.													.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	H	L	M	L	E	Q	L	G	C	E	V	I	N	L	G	I	I	R	D	D	P	H	A	L	R	A	A	F	I	E	A	D	S	Q	A	D	V	V	I	S	S	G	G	.	.	.	.	.	.	.	.	.	.	.	.	V	S	V	G	E	A	D	Y	T	K	T	I	L	E	E	L	G	E
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.
Template Sequence	I	I	N	D	I	L	A	G	X	L	D	A	G	H	A	K	V	X	E	G	R	A	E	A	V	T	C	A	V	X	Q	A	K	E	N	.	D	V	V	L	V	A	G	K	G	H	E	D	Y	Q	I	V	G	N	Q	R	L	D	Y	S	D	R	V	T	V	A	R	L	L	G	V	I	A	R
Template Known Secondary structure							T	T	S	S		G	G	G	S				S													S		T	T	.							S		T	T							T	T																T	S			S
Template Predicted Secondary structure																																				.
Template SS confidence
	423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.		.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.

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Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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