 |
Job Description | P12281 | Confidence | 50.75% | Date | Thu Jan 5 11:33:06 GMT 2012 |
Rank | 205 | Aligned Residues | 68 |
% Identity | 15% | Template | c3prjB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:udp-glucose 6-dehydrogenase; |
PDBTitle: role of packing defects in the evolution of allostery and induced fit2 in human udp-glucose dehydrogenase.
|
Resolution | 3.10 Å |
|
 |
  |   |
176 | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 240 | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
R | K | V | R | V | A | L | F | S | T | G | D | E | L | Q | L | P | G | Q | P | L | G | D | G | Q | I | Y | D | T | N | R | L | A | V | H | L | M | L | E | Q | L | G | C | E | V | I | N | L | G | I | I | R | D | D | P | H | A | L | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | A | F | I | E | A | D | S |
Query Conservation |   |
  |   |
|
|
|   |
|
|
|
|
|
|
|
|   |   |   |
|   |   |   |   |   |
|   |
|   |
|
|
|
|   |   |
|   |
|   |
|   |   |   |
|   |   |
|   |   |   |   |   |
|   |
|
|   |   |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |
|
|
| . | . | . | . | . | . | . |
|
|
|
|   |   |
|   |
|   |
|   |
|
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
Template Sequence |   |
T | D | K | K | I | A | I | L | G | . |
. |
. |
. |
. |
. |
. |
F | A | F | K | K | D | T | G | D | T | R | E | S | S | S | I | Y | I | S | K | Y | L | M | D | E | G | A | H | L | H | I | Y | D | P | K | V | P | R | E | Q | I | V | V | D | L | S | D | Q | V | S | R | L | V | T | I | S | K | D | P | Y | E | A | C | D |
Template Known Secondary structure |   |
T | T |
|  |  |  |  |  |
| . | . | . | . | . | . | . |
| S | S | S | T | T |
|
|
|
| T | T |
|  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |
| S | S | S |
|  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |
| S | S |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
327 | . | . | 330 | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . |
  |
  |   |
243 | . | . | . | . | . | . | 250 |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | A | D | V | V | I | S | S |
Query Conservation |   |
  |   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|
|   |
Template Sequence |   |
G | A | H | A | V | V | I | C |
Template Known Secondary structure |   |
T |
| S |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
  |   |
407 | . | . | 410 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|