Job Description P12281 Confidence 26.47% Date Thu Jan 5 11:33:06 GMT 2012 Rank 365 Aligned Residues 103 % Identity 11% Template c3ksmA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis Resolution 1.90 Å

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		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																																					.																.	.
Query SS confidence																																																					.																.	.
Query Sequence		V	R	V	A	L	F	S	T	G	D	E	L	Q	L	P	G	Q	P	L	G	D	G	Q	I	Y	D	T	N	R	L	A	V	H	L	M	L	E	Q	L	G	C	E	V	I	N	L	G	I	I	R	D	.	D	P	H	A	L	R	A	A	F	I	E	A	D	S	Q	.	.	A	D	V	V	I	S	S	G	G	V	S
Query Conservation																																																					.																.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																																			.																.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.
Template Sequence		P	K	L	L	L	V	L	.	.	.	.	.	.	.	.	.	.	K	G	D	S	N	A	Y	W	R	Q	V	Y	L	G	A	Q	K	A	A	D	E	A	G	V	T	L	L	H	R	S	T	K	D	D	G	D	I	A	G	Q	I	Q	I	L	S	Y	H	L	S	Q	A	P	P	D	A	L	I	L	A	P	N	S	A
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	S		S	S	S	T																	T									S	S	T	T																S			S							S	S	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.											.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	E	A	D	Y	T	K	T	I	L	E	E	L	G	E	I	A	F	W	K	L	A	I	K	P	G	K	P	F	A	F	G	K	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	L	T	P	S	V	A	Q	Y	R	A	R	N	I	P	V	L	V	V	D	S	D	L	A	G	D	A	H	Q	G	L	V	A	T	D
Template Known Secondary structure		T	T	T										T	T							S	S			S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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