 |
Job Description | P12281 | Confidence | 92.31% | Date | Thu Jan 5 11:33:06 GMT 2012 |
Rank | 36 | Aligned Residues | 78 |
% Identity | 23% | Template | c2yxbA_ |
PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:coenzyme b12-dependent mutase; |
PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix
|
Resolution | 1.80 Å |
|
 |
  |   |
175 | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | R | K | V | R | V | A | L | F | S | T | G | D | E | L | Q | L | P | G | Q | P | L | G | D | G | Q | I | Y | D | T | N | R | L | A | V | H | L | M | L | E | Q | L | G | C | E | V | I | N | L | G | I | I | R | D | D | P | H | A | L | R | A | A | F | I | E | A | D | S | Q | A | D | V | V | I | S | S | G | G | V | S |
Query Conservation |   |
  |   |   |
|
|
|   |
|
|
|
|
|
|
|
|   |   |   |
|   |   |   |   |   |
|   |
|   |
|
|
|
|   |   |
|   |
|   |
|   |   |   |
|   |   |
|   |   |   |   |   |
|   |
|
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |
|
|
|
|
|
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
| . |
|
|
|
Template Conservation |   |
  |
|   |   |
|
|
|
|   |   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |   |   |   |
|
|
|   |
|
| . |   |   |
|
Template Sequence |   |
R | R | R | Y | K | V | L | V | A | K | X | G | L | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | H | D | R | G | A | K | V | V | A | R | A | L | R | D | A | G | F | E | V | V | Y | T | G | L | R | Q | T | P | E | Q | V | A | X | A | A | V | Q | . |
. |
. |
E | D | V | D | V | I | G | V | S | . |
I | L | N |
Template Known Secondary structure |   |
|
| S |
|  |  |  |  |  |  |  | S | S | S | . | . | . | . | . | . | . | . | . | . | . | . | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |
|
|
| S | B |
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | T | T |
| S |  |  |  |  |  | . |  | S | S |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|
|  |  |  |  |  | . |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
18 | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | |
|
|
70 | . | . | . | . | . | . | . | . | |
. | 80 | . |
  |
  |   |
255 | . | . | . | . | 260 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | G | E | A | D | Y | T | K | T | I | L | E | E | L |
Query Conservation |   |
  |
|   |   |
|   |   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
G | A | H | L | H | L | X | K | R | L | X | A | K | L |
Template Known Secondary structure |   |
S |
|  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|