Job Description P12281 Confidence 83.86% Date Thu Jan 5 11:33:06 GMT 2012 Rank 65 Aligned Residues 129 % Identity 16% Template c2wpnA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough Resolution 2.04 Å

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		177	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.					.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.																																														.	.	.	.
Query SS confidence									.	.	.	.																																														.	.	.	.
Query Sequence		K	V	R	V	A	L	F	.	.	.	.	S	T	G	D	E	L	Q	L	P	G	Q	P	L	G	D	G	Q	I	Y	D	T	N	R	L	A	V	H	L	M	L	E	Q	L	G	C	E	V	I	N	L	G	I	I	R	D	.	.	.	.	D	P	H	A	L	R	A	A	F	I	E	A	D	S	Q	A	D	V	V	I
Query Conservation									.	.	.	.																																														.	.	.	.
Alig confidence									.	.	.	.								.	.	.	.	.	.	.	.	.	.																	.												.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		R	P	P	V	F	W	L	Q	G	Q	G	C	T	G	C	S	V	T	.	.	.	.	.	.	.	.	.	.	L	L	N	S	V	H	P	S	I	A	D	V	L	L	K	V	.	I	S	L	E	F	H	P	T	V	M	A	W	E	G	E	H	A	I	E	H	M	R	K	V	A	E	K	F	K	G	K	F	F	L	V
Template Known Secondary structure										S	B			S						.	.	.	.	.	.	.	.	.	.			T				T	T								T	.							T	T	T		S																	T	T	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.											.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.																		.	260	.	.	.	.	.	.	.	.	.	270	.	.								.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290									.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		S	S	G	G	V	S	V	G	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	T	K	T	I	L	E	E	L	G	E	I	A	.	.	.	.	.	.	.	F	W	K	L	A	I	K	P	G	K	P	F	A	F	G	K	L	S	.	.	.	.	.	.	.	.	N	S	W	F	C	G
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	G	S	V	P	V	E	A	D	G	K	Y	C	I	I	G	E	A	N	H	H	E	I	S	M	V	D	A	L	K	E	F	G	P	N	A	A	A	V	L	A	V	G	T	C	A	A	Y	G	G	I	P	A	A	E	G	S	E	T	G	A	T	A	V	S	K	F	L	G	D	N	G	I	K	T	P	V	V	N
Template Known Secondary structure				S	B				T	G	G	G	T	T							T	T													G	G	G															T	G	G	G	S	T	T			S												T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	G	N	P	V	S	A	T	L	T	F	Y	Q	L	V	Q	P	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	G	C	P	P	H	P	D	W	I	V	G	T	V	V	L	A	L	D
Template Known Secondary structure				S	S	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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