Job Description P12281 Confidence 51.69% Date Thu Jan 5 11:33:06 GMT 2012 Rank 201 Aligned Residues 102 % Identity 8% Template c2qvcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima Resolution 2.40 Å

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		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		V	R	V	A	L	F	S	T	G	D	E	L	Q	L	P	G	Q	P	L	G	D	G	Q	I	Y	D	T	N	R	L	A	V	H	L	M	L	E	Q	L	G	C	E	V	I	N	L	G	I	I	R	D	D	P	H	A	L	R	A	A	F	I	E	A	D	S	.	Q	A	D	V	V	I	S	S	G	G	V	S	V	G
Query Conservation																																																																			.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																																													.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	I	G	V	I	G	K	S	V	.	.	.	.	.	.	.	.	.	.	.	H	P	Y	W	S	Q	V	E	Q	G	V	K	A	A	G	K	A	L	G	V	D	T	K	F	F	V	P	Q	K	E	D	I	N	A	Q	L	Q	X	L	E	S	F	I	A	E	G	V	N	G	I	A	I	A	P	S	D	P	T	A
Template Known Secondary structure									S		S	.	.	.	.	.	.	.	.	.	.	.	S																		T									S	S																T	T		S							S	S	T	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.												.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	D	Y	T	K	T	I	L	E	E	L	G	E	I	A	F	W	K	L	A	I	K	P	G	K	P	F	A	F	G	K	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	P	T	I	K	K	A	L	E	X	G	I	P	V	V	T	L	D	T	D	S	P	D	S	G	R	Y	V	Y	I	G	T	D
Template Known Secondary structure		T										T	T							S	S			T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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