Job Description P12281 Confidence 100.00% Date Thu Jan 5 11:33:06 GMT 2012 Rank 3 Aligned Residues 391 % Identity 36% Template c2fu3A_ PDB info PDB header:biosynthetic protein/structural protein Chain: A: PDB Molecule:gephyrin; PDBTitle: crystal structure of gephyrin e-domain Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	F	T	T	G	L	M	S	L	D	T	A	L	N	E	M	L	S	R	V	T	P	L	T	A	Q	E	T	L	P	L	V	Q	C	F	G	R	I	L	A	S	D	V	V	S	P	L	D	V	P	G	F	D	N	S	A	M	D	G	Y	A	V	R	L	A	D	I	A	S	G	Q	P	L	P	V	A	G	K	S
Query Conservation
Alig confidence							.																			.																																																		.	.	.	.	.	.
Template Conservation							.																			.																																																		.	.	.	.	.	.
Template Sequence		M	S	P	F	P	.	L	T	S	M	D	K	A	F	I	T	V	L	E	M	T	P	V	L	.	G	T	E	I	I	N	Y	R	D	G	M	G	R	V	L	A	Q	D	V	Y	A	K	D	N	L	P	P	F	P	A	S	V	K	D	G	Y	A	V	R	A	A	D	G	P	G	D	R	F	I	.	.	.	.	.	.
Template Known Secondary structure				S	S		.																			.							G	G	G		T	T		B	B	S	S						S		B	S	S	S				S	S	S						T	T	T		S						.	.	.	.	.	.
Template Predicted Secondary structure							.																			.																																																		.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		F	A	G	Q	P	Y	H	G	E	W	P	A	G	T	C	I	R	I	M	T	G	A	P	V	P	E	G	C	E	A	V	V	M	Q	E	Q	T	E	Q	M	D	N	.	.	.	.	G	V	R	F	T	A	E	V	R	S	G	Q	N	I	R	R	R	G	E	D	I	S	A	G	A	V	V	F	P	A	G	T	R	L
Query Conservation																																												.	.	.	.
Alig confidence		.	.	.	.	.	.																																					.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	I	G	T	V	M	P	G	Q	V	M	R	V	T	T	G	A	P	I	P	C	G	A	D	A	V	V	Q	V	E	D	T	E	L	I	R	E	S	E	E	L	E	V	R	I	L	V	Q	A	R	P	G	Q	D	I	R	P	I	G	H	D	I	K	R	G	E	C	V	L	A	K	G	T	H	M
Template Known Secondary structure		.	.	.	.	.	.						T	T							T	T		B			T	T						B	G	G	G	B															S				T	T	T	T				T	T	S	S	B		T	T						T	T		B
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	A	E	L	P	V	I	A	S	L	G	I	A	E	V	P	V	I	R	K	V	R	V	A	L	F	S	T	G	D	E	L	Q	L	P	G	Q	P	L	G	D	G	Q	I	Y	D	T	N	R	L	A	V	H	L	M	L	E	Q	L	G	C	E	V	I	N	L	G	I	I	R	D	D	P	H	A	L	R	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P	S	E	I	G	L	L	A	T	V	G	V	T	E	V	E	V	N	K	F	P	V	V	A	V	M	S	T	G	N	E	L	L	N	P	E	D	D	L	L	P	G	K	I	R	D	S	N	R	S	T	L	L	A	T	I	Q	E	H	G	Y	P	T	I	N	L	G	I	V	G	D	N	P	D	D	L	L	N	A
Template Known Secondary structure													T																			T	T				T	T	S				T	T																	T	T											S
Template Predicted Secondary structure
Template SS confidence
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																		.	.																							.	.	.	.
Query SS confidence																																		.	.																							.	.	.	.
Query Sequence		F	I	E	A	D	S	Q	A	D	V	V	I	S	S	G	G	V	S	V	G	E	A	D	Y	T	K	T	I	L	E	E	L	.	.	G	E	I	A	F	W	K	L	A	I	K	P	G	K	P	F	A	F	G	K	L	S	.	.	.	.	N	S	W	F	C	G	L	P	G	N	P	V	S	A	T	L	T	F	Y	Q
Query Conservation																																		.	.																							.	.	.	.
Alig confidence																																		.	.																							.	.	.	.
Template Conservation
Template Sequence		L	N	E	G	I	S	R	A	D	V	I	I	T	S	G	G	V	S	M	G	E	K	D	Y	L	K	Q	V	L	D	I	D	L	H	A	Q	I	H	F	G	R	V	F	M	K	P	G	L	P	T	T	F	A	T	L	D	I	D	G	V	R	K	I	I	F	A	L	P	G	N	P	V	S	A	V	V	T	C	N	L
Template Known Secondary structure										S						S			S	S	S	S	T										T	T							S			S		B	S		T	T									T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		L	V	Q	P	L	L	A	K	L	S	G	N	T	A	S	G	L	P	A	R	Q	R	V	R	T	A	S	R	L	K	K	T	P	G	R	L	D	F	Q	R	G	V	L	Q	R	N	.	A	D	G	E	L	E	V	T	T	T	G	H	Q	G	S	H	I	F	S	S	F	S	L	G	N	C	F	I	V	L	E	R	D
Query Conservation																																																.
Alig confidence																		.																.														.
Template Conservation																		.																.
Template Sequence		F	V	V	P	A	L	R	K	M	Q	G	I	L	D	P	R	.	P	T	I	I	K	A	R	L	S	C	D	V	K	L	D	.	P	R	P	E	Y	H	R	C	I	L	T	W	H	H	Q	E	P	L	P	W	A	Q	S	T	G	N	Q	M	S	S	R	L	M	S	M	R	S	A	N	G	L	L	M	L	P	P	K
Template Known Secondary structure											T	T		S			S	.									S	S						.	S	S		B										T	T		S	S								S	S	S	S	S		S			S	S
Template Predicted Secondary structure																		.																.
Template SS confidence
		638	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.		.	.	.	.	.	.	660	.	.	.	.	.	.	.	.		.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.
		390	.	.				.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		R	G	N	.	.	.	V	E	V	G	E	W	V	E	V	E	P	F	N	A	L
Query Conservation					.	.	.
Alig confidence					.	.	.
Template Conservation
Template Sequence		T	E	Q	Y	V	E	L	H	K	G	E	V	V	D	V	M	V	I	G	R	L
Template Known Secondary structure			S	S						T	T									S
Template Predicted Secondary structure
Template SS confidence
		716	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.