Job Description P12281 Confidence 80.37% Date Thu Jan 5 11:33:06 GMT 2012 Rank 75 Aligned Residues 141 % Identity 16% Template c2d6fA_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) Resolution 3.15 Å

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		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	A	G	T	C	I	R	I	M	T	G	A	P	V	P	E	G	C	E	A	V	V	M	Q	E	Q	T	E	Q	M	D	N	G	V	R	F	T	A	E	V	R	S	G	Q	N	I	R	R	R	G	E	D	I	S	A	G	A	V	V	F	P	A	G	T	R	L	T	T	A	E	L	P	V	I	A	S	L	G	I
Query Conservation
Alig confidence															.	.	.																							.	.																.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.																							.	.																.	.														.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	V	G	D	M	V	L	V	E	K	P	D	.	.	.	V	T	Y	E	G	M	V	L	D	R	A	D	D	A	D	D	R	H	I	V	L	K	.	.	L	E	N	G	Y	N	I	G	V	E	I	S	D	A	R	.	.	I	E	L	L	E	K	G	S	A	A	E	D	P	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T								S	S	.	.	.												T	T	S		S	S						.	.		T	T	S								T	T			.	.													S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.																							.	.																.	.														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.				.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.									.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.											.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.											.	.	.	.	.	.	.	.
Query Sequence		A	E	V	P	V	I	R	K	V	R	V	A	L	F	S	T	G	D	E	L	Q	L	P	G	Q	P	L	G	D	G	Q	I	Y	D	T	N	R	L	A	V	H	L	M	L	E	Q	L	.	.	G	C	E	V	I	N	L	G	I	I	.	.	.	.	.	.	.	.	R	D	D	P	H	A	L	R	A	A	F	I	E
Query Conservation																																																	.	.											.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																										.	.											.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	E	L	P	D	V	S	I	I	S	T	G	G	T	V	A	S	I	I	D	Y	R	T	G	A	V	H	P	A	F	T	A	D	D	L	L	R	A	N	P	E	L	L	D	I	A	N	I	R	G	R	A	V	F	N	I	L	S	E	N	M	K	P	E	Y	W	V	E	T	A	R	A	V	Y	G
Template Known Secondary structure		.	.	.	.	.	.	S	S								S	S									T	T	T	S								T	T							G	G	G	G	G	T													G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		240	.	.	.		.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		A	D	S	Q	.	A	D	V	V	I	S	S	G	G	V
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		E	I	K	D	G	A	D	G	V	V	V	A	H	G	T
Template Known Secondary structure					T	T		S								T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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