Job Description P12281 Confidence 83.16% Date Thu Jan 5 11:33:06 GMT 2012 Rank 68 Aligned Residues 127 % Identity 20% Template c1pjcA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protein (l-alanine dehydrogenase); PDBTitle: l-alanine dehydrogenase complexed with nad Resolution 2.00 Å

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		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.															.	.	.	240	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	V	R	V	A	L	F	S	T	G	D	E	L	Q	L	P	G	Q	P	L	G	D	G	Q	I	Y	D	T	N	R	L	A	V	H	L	M	L	E	Q	L	G	C	E	V	I	N	L	G	I	I	R	D	D	P	H	A	L	R	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	E	A	D
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.
Template Sequence		K	P	G	K	V	V	I	L	G	G	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	V	.	.	.	.	G	T	E	A	A	K	M	A	V	G	L	G	A	Q	V	Q	I	F	D	I	N	V	E	R	L	S	Y	L	E	T	L	F	G	S	R	V	E	L	L	Y	S	N	S	A	E	I	E	T	A	V
Template Known Secondary structure												S		.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.											T	T								S													G	G	G	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.														.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.						.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.					.	.	.
Predicted Secondary structure											.	.																			.	.						.	.	.	.	.													.	.	.	.																	.	.	.	.
Query SS confidence											.	.																			.	.						.	.	.	.	.													.	.	.	.																	.	.	.	.
Query Sequence		S	Q	A	D	V	V	I	S	S	.	.	G	G	V	S	V	G	E	A	D	Y	T	K	T	I	L	E	E	L	.	.	G	E	I	A	F	.	.	.	.	.	W	K	L	A	I	K	P	G	K	P	F	A	.	.	.	.	F	G	K	L	S	N	S	W	F	C	G	L	P	G	N	P	.	.	.	.	V	S	A
Query Conservation											.	.																			.	.						.	.	.	.	.													.	.	.	.																	.	.	.	.
Alig confidence											.	.																			.	.						.	.	.	.	.													.	.	.	.																	.	.	.	.
Template Conservation
Template Sequence		A	E	A	D	L	L	I	G	A	V	L	V	P	G	R	R	A	P	I	L	V	P	A	S	L	V	E	Q	M	R	T	G	S	V	I	V	D	V	A	V	D	Q	G	G	C	V	E	T	L	H	P	T	S	H	T	Q	P	T	Y	E	V	F	G	V	V	H	Y	G	V	P	N	M	P	G	A	V	P	W	T	A
Template Known Secondary structure			T		S									T	T	S	S					B						T	T	S		T	T						T	T		T	T			S	B	T	T						S	S	S						T	T							S		G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	T	F	Y	Q	L	V	Q	P	L	L	A	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Q	A	L	N	N	S	T	L	P	Y	V	V	K	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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