Job Description P12281 Confidence 44.98% Date Thu Jan 5 11:33:06 GMT 2012 Rank 233 Aligned Residues 128 % Identity 19% Template c1l7eC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinamide nucleotide transhydrogenase, PDBTitle: crystal structure of r. rubrum transhydrogenase domain i2 with bound nadh Resolution 1.90 Å

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		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.											.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	V	R	V	A	L	F	S	T	G	D	E	L	Q	L	P	G	Q	P	L	G	D	G	Q	I	Y	D	T	N	R	L	A	V	H	L	M	L	E	Q	L	G	C	E	V	I	N	L	G	I	I	R	D	D	P	H	A	L	R	A	.	.	.	.	.	.	.	.	.	.	A	F	I	E	A	D	S	Q	A	D
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.
Template Sequence		P	P	A	R	V	L	V	F	G	V	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	A	.	.	.	.	G	L	Q	A	I	A	T	A	K	R	L	G	A	V	V	M	A	T	D	V	R	A	A	T	K	E	Q	V	E	S	L	G	G	K	F	I	K	Q	A	E	A	V	L	K	E	L	V	K	T	D
Template Known Secondary structure												S		.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.											T	T								S	S	T	T	S					T	T	T	T															T	T		S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.
Template SS confidence
		971	.	.	.	.	.	.	.	.	980	.	.														.					.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.
		246	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.							.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure									.	.																		.													.	.	.	.	.	.																							.
Query SS confidence									.	.																		.													.	.	.	.	.	.																							.
Query Sequence		V	V	I	S	S	G	G	.	.	V	S	V	G	E	A	D	Y	T	K	T	I	L	E	E	L	G	.	E	I	A	F	W	K	L	A	I	K	P	G	.	.	.	.	.	.	K	P	F	A	F	G	K	L	S	N	S	W	F	C	G	L	P	G	N	P	V	S	.	A	T	L	T	F	Y	Q	L	V	Q	P	L
Query Conservation									.	.																		.													.	.	.	.	.	.																							.
Alig confidence									.	.																		.													.	.	.	.	.	.																							.
Template Conservation
Template Sequence		I	A	I	T	T	A	L	I	P	G	K	P	A	P	V	L	I	T	E	E	M	V	T	K	M	K	P	G	S	V	I	I	D	L	A	V	E	A	G	G	N	C	P	L	S	E	P	G	K	I	V	V	K	H	G	V	K	I	V	G	H	T	N	V	P	S	R	V	A	A	D	A	S	P	L	F	A	K	N	L
Template Known Secondary structure										T	T	S						S							T	S		T	T						T	T	G	G	G	T		S	S	T	T			T	T						T	T							S		G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.
		316	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	K	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	F	L	T
Template Known Secondary structure						G
Template Predicted Secondary structure
Template SS confidence
		1140	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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