Job Description P30125 Confidence 98.96% Date Thu Jan 5 11:45:46 GMT 2012 Rank 29 Aligned Residues 261 % Identity 16% Template d1ptma_ SCOP info Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like PdxA-like Resolution 1.96

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		1	.	.	.	.	.	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.															.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.
Predicted Secondary structure															.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query SS confidence															.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query Sequence		M	S	K	N	Y	H	I	A	V	L	P	G	D	.	.	G	I	G	P	E	V	M	T	Q	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	L	D	A	V	R	N	R	F	A	M	R	I	T	T	S	H	Y	D	V	G	G	A	A	I	D	N	H	G	Q	.	.	.	.	.	.	.	.	.
Query Conservation															.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Alig confidence						.									.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Conservation						.
Template Sequence		V	K	T	Q	.	R	V	V	I	T	P	G	E	P	A	G	I	G	P	D	L	V	V	Q	L	A	Q	R	E	W	P	V	E	L	V	V	C	A	D	A	T	L	L	T	N	R	A	A	X	L	G	L	P	L	T	L	R	P	Y	S	P	N	S	P	A	Q	P	Q	T	A	G	T	L	T	L	L	P	V	A	L
Template Known Secondary structure						.								S	T	T	S	S									T	T	S			S	S																		T	T										T	T	S							T	T
Template Predicted Secondary structure						.
Template SS confidence
		2	.	.	.		.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
																					56	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	P	P	A	T	V	E	G	C	E	Q	.	.	A	D	A	V	L	F	G	S	V	G	G	P	K	W	E	H	L	P	P	D	Q	Q	P	E	R	G	A	L	L	P	L	R	K	H	F	K	L	F	S	N	L	R	P	A	K	L	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.										.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	P	V	T	A	G	Q	L	A	V	E	N	G	H	Y	V	V	E	T	L	.	A	R	A	C	D	G	C	L	N	G	E	F	A	A	L	I	T	G	P	V	H	K	G	V	I	N	D	A	G	I	P	F	T	G	H	T	E	F	F	E	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S			B	T	T	B			T	T										.										T	S		S															T	T														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190
Predicted Secondary structure																																																																										.	.	.	.
Query SS confidence																																																																										.	.	.	.
Query Sequence		Q	G	L	E	A	F	C	P	L	R	A	D	I	A	A	N	G	F	D	I	L	C	V	R	E	L	T	G	G	I	Y	F	G	Q	P	K	G	R	E	G	S	G	Q	Y	E	K	A	F	D	T	E	V	Y	H	R	F	E	I	E	R	I	A	R	I	A	F	E	S	A	R	K	R	.	.	.	.	R	H	K	V
Query Conservation																																																																										.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Sequence		S	Q	A	K	K	V	V	.	.	.	.	.	.	.	.	.	.	.	.	X	X	L	A	T	E	E	L	R	V	A	L	A	T	T	H	L	P	L	R	D	I	A	D	A	.	.	.	.	.	.	.	.	I	T	P	A	L	L	H	E	V	I	A	I	L	H	H	D	L	R	T	K	F	G	I	A	E	P	R	I
Template Known Secondary structure		T	T		S				.	.	.	.	.	.	.	.	.	.	.	.					S	S	S						S	S		S	S		G	G	G					.	.	.	.	.	.	.	.																				T	T			S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150													.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.									.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		191	.	.	.											.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.
Query Sequence		T	S	I	D	.	.	.	.	.	.	.	.	.	.	K	A	N	V	L	Q	S	S	I	L	W	R	E	I	V	N	E	I	A	T	E	Y	P	D	V	E	L	A	H	M	Y	I	D	N	A	T	M	Q	L	I	K	D	P	S	Q	F	D	V	L	L	C	S	N	L	F	G	D	I	L	S	D	E	C	A	M	I
Query Conservation						.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.						.	.																			.																.	.									.	.					.	.	.	.
Template Conservation																					.	.																			.																.	.									.	.					.	.	.	.
Template Sequence		L	V	C	G	L	N	P	H	A	G	E	G	G	H	X	G	T	E	E	.	.	I	D	T	I	I	P	V	L	N	E	L	R	A	Q	G	X	K	L	.	N	G	P	L	P	A	D	T	L	F	Q	P	K	Y	L	.	.	D	N	A	D	A	V	L	A	.	.	X	Y	H	D	.	.	.	.	Q	G	L	P	V
Template Known Secondary structure						S	S	G	G	G	G	G	G	G	T	T		S			.	.			T											T	T				.										S	S					.	.	T	T		S					.	.	S	S			.	.	.	.
Template Predicted Secondary structure																					.	.																			.																.	.									.	.					.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.			.	.	.	.					.	.	270	.	.
		261	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		T	G	S	M	G	M	L	P	S	A	S	.	.	L	N	E	Q	G	F	G	L	Y	E	P	A	G	G	S	A	P	D	I	A	G	K	N	I	A	N	P	I	A	Q	I	L	S	L	A	L	L	L	R	Y
Query Conservation													.	.
Alig confidence													.	.					.
Template Conservation																			.
Template Sequence		L	K	Y	Q	G	F	G	R	G	V	N	I	T	L	G	L	P	.	F	I	R	T	S	V	D	H	G	T	A	L	E	L	A	G	R	G	K	A	D	V	G	S	F	I	T	A	L	N	L	A	I	K	X
Template Known Secondary structure				T	T		S	S	S							S	S	S	.	S						S	S				G	G	G	T	T	S	S
Template Predicted Secondary structure																			.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions