Job Description P30125 Confidence 100.00% Date Thu Jan 5 11:45:46 GMT 2012 Rank 27 Aligned Residues 348 % Identity 20% Template c3us8A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase [nadp]; PDBTitle: crystal structure of an isocitrate dehydrogenase from sinorhizobium2 meliloti 1021 Resolution 2.25 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	K	N	Y	H	I	A	V	L	P	G	D	G	I	G	P	E	V	M	T	Q	A	L	K	V	L	D	A	V	R	N	R	F	A	M	R	I	T	T	S	H	Y	D	V	G	G	A	A	I	D	N	H	G	Q	P	L	P	P	A	T	V	E	G	C	E	Q	A	D	A	V	L	F	G	S	V	G	G	P	K
Query Conservation
Alig confidence					.	.																											.	.	.	.
Template Conservation					.	.																											.	.	.	.
Template Sequence		V	A	N	.	.	P	V	V	E	L	D	G	D	E	X	T	R	I	I	W	Q	F	I	K	D	K	L	I	H	P	Y	.	.	.	.	L	D	L	D	L	E	Y	Y	D	L	G	V	E	N	R	D	A	T	D	D	Q	V	T	I	D	A	A	N	A	I	K	K	H	G	V	G	V	K	C	A	T	I	T	P	D
Template Known Secondary structure				S	.	.																							T	T	T	T	.	.	.	.																		T	T	T														S
Template Predicted Secondary structure					.	.																											.	.	.	.
Template SS confidence
		6	.	.			.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.					.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure								.	.																																																																								.
Query SS confidence								.	.																																																																								.
Query Sequence		W	E	H	L	P	P	.	.	D	Q	Q	P	E	R	G	A	L	L	P	L	R	K	H	F	K	L	F	S	N	L	R	P	A	K	L	Y	Q	G	L	E	A	F	C	P	L	R	A	D	I	A	A	N	G	F	D	I	L	C	V	R	E	L	T	G	G	I	Y	F	G	Q	P	K	G	R	E	G	S	G	Q	.
Query Conservation								.	.																																																																								.
Alig confidence								.	.																											.										.	.	.	.	.	.																														.
Template Conservation																																				.										.	.	.	.	.	.
Template Sequence		E	G	R	V	E	E	F	K	L	K	K	X	W	K	S	P	N	G	T	I	R	N	I	L	G	G	V	I	F	R	E	P	I	I	.	C	K	N	V	P	R	L	V	P	.	.	.	.	.	.	G	W	T	K	P	I	I	V	G	R	H	A	F	G	D	Q	Y	R	A	T	D	F	K	F	P	G	K	G	K	L
Template Known Secondary structure									T		S	S															S									.		T	T	S			S	S	T	.	.	.	.	.	.	T			S									S	S	G	G	G	G								S	S
Template Predicted Secondary structure																																				.										.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.							.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
																						158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.																.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.																.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	K	A	F	D	T	E	V	Y	H	R	F	E	I	E	R	I	A	R	I	A	F	E	S	A	R	K	R	R	H	K	V	T	S	I	D	K	A	N	V	L	Q	.	S	S	I	L	W	R	E	I	V	N	E	I	A	T	E	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.																.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.																.
Template Conservation
Template Sequence		S	I	K	F	V	G	E	D	G	Q	T	I	E	H	D	V	Y	D	A	P	G	A	G	V	A	L	A	X	Y	N	L	D	E	S	I	T	E	F	A	R	A	S	F	N	Y	G	L	Q	R	K	V	P	V	Y	L	S	T	K	N	T	I	L	K	A	Y	D	G	R	F	K	D	I	F	Q	K	V	F	D	E	E
Template Known Secondary structure								T	T	S											S	S																													T									T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
								216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																														.
Query SS confidence		.	.	.	.	.	.																																																														.
Query Sequence		.	.	.	.	.	.	Y	P	D	V	E	L	A	H	M	Y	I	D	N	A	T	M	Q	L	I	K	D	P	S	Q	F	D	V	L	L	C	S	N	L	F	G	D	I	L	S	D	E	C	A	M	I	T	G	S	M	G	M	L	P	S	A	S	L	N	E	Q	G	.	F	G	L	Y	E	P	A	G	G	S	A	P
Query Conservation		.	.	.	.	.	.																																																														.
Alig confidence		.	.	.	.	.	.																										.																																				.
Template Conservation																																	.
Template Sequence		F	A	A	Q	F	K	A	E	K	L	W	Y	E	H	R	L	I	D	D	X	V	A	S	A	L	K	W	S	G	G	Y	.	V	W	A	C	K	N	Y	D	G	D	V	Q	S	D	I	V	A	Q	G	F	G	S	L	G	L	X	T	S	V	L	X	T	P	D	G	K	T	V	E	A	E	A	A	H	G	T	V	T
Template Known Secondary structure		T							T	T																		S					.																					S		T	T	S								T	T	S									S
Template Predicted Secondary structure																																	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		289	290	.	.	.	.	.	.							.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.								.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.					340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure										.	.	.	.	.	.																						.	.	.	.	.	.	.																							.	.	.	.
Query SS confidence										.	.	.	.	.	.																						.	.	.	.	.	.	.																							.	.	.	.
Query Sequence		D	I	A	G	K	N	I	A	.	.	.	.	.	.	N	P	I	A	Q	I	L	S	L	A	L	L	L	R	Y	S	L	D	A	D	D	.	.	.	.	.	.	.	A	A	C	A	I	E	R	A	I	N	R	A	L	E	E	G	I	R	T	G	D	L	.	.	.	.	A	R	G	A	A	A	V	S	T	D	E	M
Query Conservation										.	.	.	.	.	.																						.	.	.	.	.	.	.																							.	.	.	.
Alig confidence										.	.	.	.	.	.																.						.	.	.	.	.	.	.																							.	.	.	.
Template Conservation																															.
Template Sequence		R	H	Y	R	Q	H	Q	K	G	E	E	T	S	T	N	S	I	A	S	I	F	A	W	T	R	G	L	A	H	.	R	A	K	L	D	G	N	A	E	L	A	K	F	S	E	T	L	E	R	V	C	V	D	T	V	E	S	G	F	X	T	K	D	L	A	L	L	I	G	P	D	Q	P	W	L	S	T	T	G	F
Template Known Secondary structure									T	T																					.						T																					T	T			B									T	T				B
Template Predicted Secondary structure																															.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		352	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	I	I	A	R	Y	V	A	E	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	K	I	D	E	N	L	R	K	A	X
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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