Job Description P30125 Confidence 100.00% Date Thu Jan 5 11:45:46 GMT 2012 Rank 22 Aligned Residues 322 % Identity 31% Template c3blxM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:isocitrate dehydrogenase [nad] subunit 1; PDBTitle: yeast isocitrate dehydrogenase (apo form) Resolution 2.70 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	H	I	A	V	L	P	G	D	G	I	G	P	E	V	M	T	Q	A	L	K	V	L	D	A	V	R	N	R	F	A	M	R	I	T	T	S	H	Y	D	V	G	G	A	A	I	D	N	H	G	Q	P	L	P	P	A	T	V	E	G	C	E	Q	A	D	A	V	L	F	G	S	V	G	G	P	K	W	E	H
Query Conservation
Alig confidence																													.	.	.	.																	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																													.	.	.	.																	.	.	.	.	.	.	.	.	.																						.	.	.
Template Sequence		R	F	T	V	T	L	I	P	G	D	G	V	G	K	E	I	T	D	S	V	R	T	I	F	E	A	E	.	.	.	.	N	I	P	I	D	W	E	T	I	N	I	K	E	G	V	Y	.	.	.	.	.	.	.	.	.	E	A	V	E	S	L	K	R	N	K	I	G	L	K	G	L	W	H	T	P	A	.	.	.
Template Known Secondary structure											S																		.	.	.	.	T		S														.	.	.	.	.	.	.	.	.																			S			.	.	.
Template Predicted Secondary structure																													.	.	.	.																	.	.	.	.	.	.	.	.	.																						.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.										60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	P	D	Q	Q	P	E	R	G	A	L	L	P	L	R	K	H	F	K	L	F	S	N	L	R	P	A	K	L	Y	Q	G	L	E	A	F	C	P	L	R	A	D	I	A	A	N	G	F	D	I	L	C	V	R	E	L	T	G	G	I	Y	F	G	Q	P	K	G	R	E	G	S	G	Q	Y	E	K	A	F	D
Query Conservation
Alig confidence		.	.	.																																					.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation		.	.	.																																					.	.	.	.	.	.	.	.																							.	.	.	.
Template Sequence		.	.	.	D	Q	T	G	H	G	S	L	N	V	A	L	R	K	Q	L	D	I	Y	A	N	V	A	L	F	K	S	L	K	G	V	K	T	R	I	P	.	.	.	.	.	.	.	.	D	I	D	L	I	V	I	R	E	N	T	E	G	E	F	S	G	L	E	H	E	S	.	.	.	.	V	P	G	V	V	E	S
Template Known Secondary structure		.	.	.				T											T	S													T	T				S	S		.	.	.	.	.	.	.	.	S										S	S	G	G	G	S							.	.	.	.		T	T
Template Predicted Secondary structure		.	.	.																																					.	.	.	.	.	.	.	.																							.	.	.	.
Template SS confidence
					86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.									.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																									.															.														.
Query SS confidence																									.															.														.
Query Sequence		T	E	V	Y	H	R	F	E	I	E	R	I	A	R	I	A	F	E	S	A	R	K	R	.	R	H	K	V	T	S	I	D	K	A	N	V	L	Q	.	S	S	I	L	W	R	E	I	V	N	E	I	A	.	T	E	Y	P	D	V	E	L	A	H	M	Y	I	D	N	A	T	M	Q	L	I	K	D	P	S	Q	F
Query Conservation																									.															.														.
Alig confidence																									.															.														.
Template Conservation
Template Sequence		L	K	V	M	T	R	P	K	T	E	R	I	A	R	F	A	F	D	F	A	K	K	Y	N	R	K	S	V	T	A	V	H	K	A	N	I	M	K	L	G	D	G	L	F	R	N	I	I	T	E	I	G	Q	K	E	Y	P	D	I	D	V	S	S	I	I	V	D	N	A	S	M	Q	A	V	A	K	P	H	Q	F
Template Known Secondary structure																								T	T										T	T	T	S	T	T																		T	T	S																		G	G	G
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		D	V	L	L	C	S	N	L	F	G	D	I	L	S	D	E	C	A	M	I	T	G	S	M	G	M	L	P	S	A	S	L	N	E	Q	G	F	G	L	Y	E	P	.	A	G	G	S	A	P	D	I	A	G	K	N	I	A	N	P	I	A	Q	I	L	S	L	A	L	L	L	R	Y	S	L	D	A	D	D	A	A
Query Conservation																																												.
Alig confidence																																					.							.																														.
Template Conservation																																					.																																					.
Template Sequence		D	V	L	V	T	P	S	M	Y	G	T	I	L	G	N	I	G	A	A	L	I	G	G	P	G	L	V	A	G	A	N	F	G	R	D	.	Y	A	V	F	E	P	G	S	R	H	V	G	L	D	I	K	G	Q	N	V	A	N	P	T	A	M	I	L	S	S	T	L	M	L	N	H	.	L	G	L	N	E	Y	A
Template Known Secondary structure		S																					T		G	G	G								S	S	.							T	T	T	T	T	T						T	T																		.		T
Template Predicted Secondary structure																																					.																																					.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		C	A	I	E	R	A	I	N	R	A	L	E	E	G	.	I	R	T	G	D	L	A	R	G	A	A	A	V	S	T	D	E	M	G	D	I	I	A	R	Y	V	A	E
Query Conservation																.
Alig confidence																.											.	.	.
Template Conservation																											.	.	.
Template Sequence		T	R	I	S	K	A	V	H	E	T	I	A	E	G	K	H	T	T	R	D	I	G	G	S	S	.	.	.	S	T	T	D	F	T	N	E	I	I	N	K	L	S	T
Template Known Secondary structure														S	S	S	S		B	G	G	G	T			B	.	.	.
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.				.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions