Job Description P30125 Confidence 100.00% Date Thu Jan 5 11:45:46 GMT 2012 Rank 23 Aligned Residues 346 % Identity 23% Template c2uxqB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase native; PDBTitle: isocitrate dehydrogenase from the psychrophilic bacterium2 desulfotalea psychrophila: biochemical properties and3 crystal structure analysis Resolution 1.75 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	K	N	Y	H	I	A	V	L	P	G	D	G	I	G	P	E	V	M	T	Q	A	L	K	V	L	D	A	V	R	N	R	F	A	M	R	I	T	T	S	H	Y	D	V	G	G	A	A	I	D	N	H	G	Q	P	L	P	P	A	T	V	E	G	C	E	Q	A	D	A	V	L	F	G	S	V	G	G	P	K
Query Conservation
Alig confidence					.	.																											.	.	.	.
Template Conservation					.	.																											.	.	.	.
Template Sequence		M	K	T	.	.	P	L	V	E	L	D	G	D	E	M	T	R	V	L	W	P	L	I	K	D	K	L	L	L	P	F	.	.	.	.	I	D	L	Q	T	E	Y	Y	D	L	G	I	E	E	R	D	R	T	N	D	Q	I	T	I	D	A	A	E	A	I	K	K	Y	G	V	G	V	K	N	A	T	I	T	P	N
Template Known Secondary structure			S	S	.	.																							T	T	T	T	.	.	.	.	B										S							T	T	T														S
Template Predicted Secondary structure					.	.																											.	.	.	.
Template SS confidence
		5	.	.			.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		81	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		W	E	H	L	P	P	.	.	D	Q	Q	P	E	R	G	A	L	L	P	L	R	K	H	F	K	L	F	S	N	L	R	P	A	K	L	Y	Q	G	L	E	A	F	C	P	L	R	A	D	I	A	A	N	G	F	D	I	L	C	V	R	E	L	T	G	G	I	Y	F	G	Q	P	K	G	R	E	G	S	G	Q	Y
Query Conservation								.	.
Alig confidence								.	.																											.										.	.	.	.	.	.
Template Conservation																																				.										.	.	.	.	.	.
Template Sequence		Q	D	R	V	E	E	Y	G	L	K	E	Q	W	K	S	P	N	A	T	V	R	A	M	L	D	G	T	V	F	R	K	P	I	M	.	V	K	N	I	K	P	S	V	R	.	.	.	.	.	.	S	W	Q	K	P	I	V	V	G	R	H	A	Y	G	D	F	Y	K	N	A	E	I	F	A	E	A	G	G	K	L
Template Known Secondary structure									T		S	S																								.		T	T	B			S	S	T	.	.	.	.	.	.	T			S									S		G	G	G	G							T	T
Template Predicted Secondary structure																																				.										.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		159	160																						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.		.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.														.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.														.
Query Sequence		E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	D	T	E	V	Y	H	R	F	E	I	E	R	I	A	R	I	A	F	E	S	A	R	K	R	R	H	K	V	T	S	I	D	K	A	N	V	L	Q	.	S	S	I	L	W	R	E	I	V	N	E	I	A	.	T	E
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.														.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.														.
Template Conservation
Template Sequence		E	I	V	V	T	D	K	N	G	K	E	T	R	Q	T	I	M	E	V	D	E	P	A	I	V	Q	G	I	H	N	T	V	A	S	I	G	H	F	A	R	A	C	F	E	Y	S	L	D	Q	K	I	D	C	W	F	A	T	K	D	T	I	S	K	Q	Y	D	Q	R	F	K	I	I	F	E	E	I	F	A	Q	E
Template Known Secondary structure								T	T												S	S																													T									T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		216	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.
Query Sequence		Y	P	D	.	.	.	.	.	.	V	E	L	A	H	M	Y	I	D	N	A	T	M	Q	L	I	K	D	P	S	Q	F	D	V	L	L	C	S	N	L	F	G	D	I	L	S	D	E	C	A	M	I	T	G	S	M	G	M	L	P	S	A	S	L	N	E	Q	G	F	G	L	Y	E	P	A	G	G	S	A	P	D
Query Conservation					.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.																							.
Template Conservation																																	.
Template Sequence		Y	K	E	K	F	A	A	A	G	I	E	Y	F	Y	T	L	I	D	D	V	V	A	R	M	M	K	T	E	G	G	M	.	L	W	A	C	K	N	Y	D	G	D	V	M	S	D	M	V	A	S	A	F	G	S	L	A	M	M	S	S	V	L	V	S	P	Y	G	Y	F	E	Y	E	A	A	H	G	T	V	Q	R
Template Known Secondary structure		T								T																T	T					S	.																					T		T	T	S								T	T	S								S
Template Predicted Secondary structure																																	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		290	.	.	.	.	.	.							.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.								.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.						.	.	.	.	.	350	.
Predicted Secondary structure									.	.	.	.	.	.																						.	.	.	.	.	.	.																												.	.	.	.	.
Query SS confidence									.	.	.	.	.	.																						.	.	.	.	.	.	.																												.	.	.	.	.
Query Sequence		I	A	G	K	N	I	A	.	.	.	.	.	.	N	P	I	A	Q	I	L	S	L	A	L	L	L	R	Y	S	L	D	A	D	D	.	.	.	.	.	.	.	A	A	C	A	I	E	R	A	I	N	R	A	L	E	E	G	I	R	T	G	D	L	A	R	G	A	A	.	.	.	.	.	A	V	S	T	D	E	M
Query Conservation									.	.	.	.	.	.																						.	.	.	.	.	.	.																												.	.	.	.	.
Alig confidence									.	.	.	.	.	.																.						.	.	.	.	.	.	.																												.	.	.	.	.
Template Conservation																														.
Template Sequence		H	Y	Y	Q	H	L	K	G	E	R	T	S	T	N	P	V	A	L	I	Y	A	W	T	G	A	L	R	K	.	R	G	E	L	D	G	T	P	D	L	C	A	F	C	D	S	L	E	A	I	T	I	E	C	I	E	S	G	Y	M	T	G	D	L	A	R	I	C	E	P	A	A	I	K	V	L	D	S	I	E	F
Template Known Secondary structure								T	T																					.						T																					T	T								T	T	B	S	S			S
Template Predicted Secondary structure																														.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	I	I	A	R	Y	V	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	E	L	G	K	R	L	Q	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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