Job Description P30125 Confidence 100.00% Date Thu Jan 5 11:45:46 GMT 2012 Rank 26 Aligned Residues 348 % Identity 21% Template c2qfyE_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:isocitrate dehydrogenase [nadp]; PDBTitle: crystal structure of saccharomyces cerevesiae mitochondrial nadp(+)-2 dependent isocitrate dehydrogenase in complex with a-ketoglutarate Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	K	N	Y	H	I	A	V	L	P	G	D	G	I	G	P	E	V	M	T	Q	A	L	K	V	L	D	A	V	R	N	R	F	A	M	R	I	T	T	S	H	Y	D	V	G	G	A	A	I	D	N	H	G	Q	P	L	P	P	A	T	V	E	G	C	E	Q	A	D	A	V	L	F	G	S	V	G	G	P	K
Query Conservation
Alig confidence					.	.																											.	.	.	.
Template Conservation					.	.																											.	.	.	.
Template Sequence		V	K	Q	.	.	P	V	V	E	L	D	G	D	E	M	T	R	I	I	W	D	K	I	K	K	K	L	I	L	P	Y	.	.	.	.	L	D	V	D	L	K	Y	Y	D	L	S	V	E	S	R	D	A	T	S	D	K	I	T	Q	D	A	A	E	A	I	K	K	Y	G	V	G	I	K	C	A	T	I	T	P	D
Template Known Secondary structure			S	S	.	.																						T	T	T	T	T	.	.	.	.											S							T	T	T														S
Template Predicted Secondary structure					.	.																											.	.	.	.
Template SS confidence
		7	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.					.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure						.	.																																																																										.
Query SS confidence						.	.																																																																										.
Query Sequence		W	E	H	L	.	.	P	P	D	Q	Q	P	E	R	G	A	L	L	P	L	R	K	H	F	K	L	F	S	N	L	R	P	A	K	L	Y	Q	G	L	E	A	F	C	P	L	R	A	D	I	A	A	N	G	F	D	I	L	C	V	R	E	L	T	G	G	I	Y	F	G	Q	P	K	G	R	E	G	S	G	Q	.
Query Conservation						.	.																																																																										.
Alig confidence						.	.																													.										.	.	.	.	.	.																														.
Template Conservation																																				.										.	.	.	.	.	.
Template Sequence		E	A	R	V	K	E	F	N	L	H	K	M	W	K	S	P	N	G	T	I	R	N	I	L	G	G	T	V	F	R	E	P	I	V	.	I	P	R	I	P	R	L	V	P	.	.	.	.	.	.	R	W	E	K	P	I	I	I	G	R	H	A	H	G	D	Q	Y	K	A	T	D	T	L	I	P	G	P	G	S	L
Template Known Secondary structure								T	T		S	S															S									.		T	T	S			S	S	T	.	.	.	.	.	.	T			S									S	S	G	G	G	S								S	S
Template Predicted Secondary structure																																				.										.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.							.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
																									158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	K	A	F	D	T	E	V	Y	H	R	F	E	I	E	R	I	A	R	I	A	F	E	S	A	R	K	R	R	H	K	V	T	S	I	D	K	A	N	V	L	Q	.	S	S	I	L	W	R	E	I	V	N	E	I	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation
Template Sequence		E	L	V	Y	K	P	S	D	P	T	T	A	Q	P	Q	T	L	K	V	Y	D	Y	K	G	S	G	V	A	M	A	M	Y	N	T	D	E	S	I	E	G	F	A	H	S	S	F	K	L	A	I	D	K	K	L	N	L	F	L	S	T	K	N	T	I	L	K	K	Y	D	G	R	F	K	D	I	F	Q	E	V	Y
Template Known Secondary structure								S		T	T	T	S											S	S																												T	T									T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		214								.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.																																																															.
Query SS confidence			.	.	.	.	.	.	.																																																															.
Query Sequence		T	.	.	.	.	.	.	.	E	Y	P	D	V	E	L	A	H	M	Y	I	D	N	A	T	M	Q	L	I	K	D	P	S	Q	F	D	V	L	L	C	S	N	L	F	G	D	I	L	S	D	E	C	A	M	I	T	G	S	M	G	M	L	P	S	A	S	L	N	E	Q	G	.	F	G	L	Y	E	P	A	G	G
Query Conservation			.	.	.	.	.	.	.																																																															.
Alig confidence			.	.	.	.	.	.	.																											.																																				.
Template Conservation																																				.
Template Sequence		E	A	Q	Y	K	S	K	F	E	Q	L	G	I	H	Y	E	H	R	L	I	D	D	M	V	A	Q	M	I	K	S	K	G	G	F	.	I	M	A	L	K	N	Y	D	G	D	V	Q	S	D	I	V	A	Q	G	F	G	S	L	G	L	M	T	S	I	L	V	T	P	D	G	K	T	F	E	S	E	A	A	H	G
Template Known Secondary structure					T								T																		S					.																					T		T	T	S								T	T	S									S
Template Predicted Secondary structure																																				.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		286	.	.	.	290	.	.	.	.	.	.							.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.								.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.							.	.
Predicted Secondary structure													.	.	.	.	.	.																						.	.	.	.	.	.	.														.														.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.																						.	.	.	.	.	.	.														.														.	.	.	.	.	.
Query Sequence		S	A	P	D	I	A	G	K	N	I	A	.	.	.	.	.	.	N	P	I	A	Q	I	L	S	L	A	L	L	L	R	Y	S	L	D	A	D	D	.	.	.	.	.	.	.	A	A	C	A	I	E	R	A	I	N	R	A	L	.	E	E	G	I	R	T	G	D	L	A	R	G	A	.	.	.	.	.	.	A	A
Query Conservation													.	.	.	.	.	.																						.	.	.	.	.	.	.														.														.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.																.						.	.	.	.	.	.	.														.														.	.	.	.	.	.
Template Conservation																																		.
Template Sequence		T	V	T	R	H	Y	R	K	Y	Q	K	G	E	E	T	S	T	N	S	I	A	S	I	F	A	W	S	R	G	L	L	K	.	R	G	E	L	D	N	T	P	A	L	C	K	F	A	N	I	L	E	S	A	T	L	N	T	V	Q	Q	D	G	I	M	T	K	D	L	A	L	A	C	G	N	N	E	R	S	A	Y
Template Known Secondary structure											T	T	T																					.						T																					T	S												T				G	G	G
Template Predicted Secondary structure																																		.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	T	D	E	M	G	D	I	I	A	R	Y	V	A	E	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	T	E	E	F	L	D	A	V	E	K	R	L	Q	K	E	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions