Job Description P30125 Confidence 98.96% Date Thu Jan 5 11:45:46 GMT 2012 Rank 30 Aligned Residues 256 % Identity 19% Template c2hi1A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:4-hydroxythreonine-4-phosphate dehydrogenase 2; PDBTitle: the structure of a putative 4-hydroxythreonine-4-phosphate2 dehydrogenase from salmonella typhimurium. Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.																	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.
Predicted Secondary structure														.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	N	Y	H	I	A	V	L	P	G	D	.	.	G	I	G	P	E	V	M	T	Q	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	L	D	A	V	.	R	N	R	F	A	M	R	I	T	T	S	H	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation														.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.									.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.
Template Sequence		T	K	.	.	T	V	A	I	T	X	G	D	P	A	G	I	G	P	E	I	I	V	K	A	L	S	E	D	G	L	N	G	A	P	L	V	V	I	G	C	L	A	T	L	K	R	L	Q	A	K	G	I	T	P	N	V	E	L	R	A	I	E	R	V	A	E	A	R	F	A	P	G	I	I	H	V	I	D	E	P
Template Known Secondary structure				.	.									T	T	T	T										T	S	T	T	T	T	T		S																T	T	S	S									S	S	G	G	G					T	T
Template Predicted Secondary structure				.	.
Template SS confidence
		3	.			.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
																44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	G	G	A	A	I	D	N	H	G	Q	P	L	P	P	A	T	V	E	G	C	E	.	.	Q	A	D	A	V	L	F	G	S	V	G	G	P	K	W	E	H	L	P	P	D	Q	Q	P	E	R	G	A	L	L	P	L	R	K	H	F	K	L	F	S	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.									.	.
Template Conservation																										.	.	.	.	.
Template Sequence		L	A	Q	P	E	A	L	E	A	G	K	V	Q	A	Q	A	G	D	L	A	Y	R	C	V	.	.	.	.	.	K	R	A	T	E	L	A	L	R	G	D	V	Q	A	I	A	T	A	P	L	N	K	E	A	L	H	L	A	G	H	N	Y	P	G	H	T	E	L	L	A	T	L	T	H	S	R	D	Y	A	X	V
Template Known Secondary structure			S		G	G	G			T	T	S														.	.	.	.	.									T	T	S		S															T	T				S	S									T	T
Template Predicted Secondary structure																										.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.						.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		L	R	P	A	K	L	Y	Q	G	L	E	A	F	C	P	L	R	A	D	I	A	A	N	G	F	D	I	L	C	V	R	E	L	T	G	G	I	Y	F	G	Q	P	K	G	R	E	G	S	G	Q	Y	E	K	A	F	D	T	E	V	Y	H	R	F	E	I	E	R	I	A	R	I	A	F	E	S	A	R	K	R	.
Query Conservation																																																																																	.
Alig confidence														.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation														.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	T	D	K	L	K	V	I	H	V	S	.	.	.	.	.	T	H	I	A	L	R	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	T	L	S	T	A	R	V	E	T	V	I	G	I	A	D	T	F	L	K	R	V	G
Template Known Secondary structure					S	S						S		.	.	.	.	.		S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							T	T
Template Predicted Secondary structure														.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.						.	.	170	.	.	.	.	.																																.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
				187	.	.	190	.	.	.								.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure		.	.								.	.	.	.	.	.	.
Query SS confidence		.	.								.	.	.	.	.	.	.
Query Sequence		.	.	R	H	K	V	T	S	I	.	.	.	.	.	.	.	D	K	A	N	V	L	Q	S	S	I	L	W	R	E	I	V	N	E	I	A	T	E	Y	P	D	V	E	L	A	H	M	Y	I	D	N	A	T	M	Q	L	I	K	D	P	S	Q	F	D	V	L	L	C	S	N	L	F	G	D	I	L	S	D	E	C
Query Conservation		.	.								.	.	.	.	.	.	.
Alig confidence		.	.								.	.	.	.	.	.	.																																											.	.									.	.					.	.	.	.
Template Conservation																																																												.	.									.	.					.	.	.	.
Template Sequence		Y	V	K	P	R	I	A	V	A	G	V	N	P	H	A	G	E	N	G	L	F	G	D	E	E	T	R	I	L	T	P	A	I	T	D	A	R	A	K	G	X	D	V	Y	G	P	C	P	P	D	T	V	F	L	Q	A	Y	E	.	.	G	Q	Y	D	X	V	V	A	.	.	X	Y	H	D	.	.	.	.	Q	G
Template Known Secondary structure			S	S								S	S	G	G	G	S	S	T	T	S								T										T	T	T																		T	.	.	T	S		S					.	.	S	S			.	.	.	.
Template Predicted Secondary structure																																																												.	.									.	.					.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.			.	.	.	.					270	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		A	M	I	T	G	S	M	G	M	L	P	S	A	S	L	.	.	N	E	Q	G	F	G	L	Y	E	P	A	G	G	S	A	P	D	I	A	G	K	N	I	A	N	P	I	A	Q	I	L	S	L	A	L	L	L	R
Query Conservation																	.	.
Alig confidence												.					.	.				.
Template Conservation												.										.
Template Sequence		H	I	P	L	K	L	L	G	Y	D	.	G	V	N	I	T	A	G	L	P	.	F	I	R	T	S	A	D	H	G	T	A	F	D	I	A	W	T	G	K	A	K	S	E	S	X	A	V	S	I	K	L	A	X	Q
Template Known Secondary structure												.	S						T	S	S	.	S						S					T	T	T	T	T	T	T
Template Predicted Secondary structure												.										.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions