Job Description P30125 Confidence 100.00% Date Thu Jan 5 11:45:46 GMT 2012 Rank 12 Aligned Residues 344 % Identity 29% Template c2d4vD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:isocitrate dehydrogenase; PDBTitle: crystal structure of nad dependent isocitrate dehydrogenase2 from acidithiobacillus thiooxidans Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.																					.	.
Query SS confidence																																		.	.	.																					.	.
Query Sequence		S	K	N	Y	H	I	A	V	L	P	G	D	G	I	G	P	E	V	M	T	Q	A	L	K	V	L	D	A	V	R	N	R	.	.	.	F	A	M	R	I	T	T	S	H	Y	D	V	G	G	A	A	I	D	N	H	.	.	G	Q	P	L	P	P	A	T	V	E	G	C	E	Q	A	D	A	V	L	F	G	S	V
Query Conservation																																		.	.	.																					.	.
Alig confidence																																		.	.	.																					.	.
Template Conservation
Template Sequence		P	D	Q	P	I	I	P	F	I	E	G	D	G	I	G	C	D	V	T	P	A	M	R	S	V	V	D	A	A	V	A	K	V	Y	G	G	Q	R	Q	I	A	W	M	E	L	F	A	G	Q	K	A	V	Q	L	Y	G	E	G	Q	Y	L	P	D	E	T	M	A	A	I	R	E	Y	K	V	A	I	K	G	P	L
Template Known Secondary structure			S	S	B								S	T	T																					T	T	S											T									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		G	G	P	K	W	E	H	L	P	P	D	Q	Q	P	E	R	G	A	L	L	P	L	R	K	H	F	K	L	F	S	N	L	R	P	A	K	L	Y	Q	G	L	E	A	F	C	P	L	R	A	D	I	A	A	N	G	F	D	I	L	C	V	R	E	L	T	G	G	I	Y	F	G	Q	P	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.																																.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.																																.	.	.	.	.
Template Sequence		E	T	P	V	G	G	G	I	.	.	.	.	.	.	.	R	S	L	N	V	A	M	R	Q	D	L	D	L	Y	V	C	L	R	P	V	R	Y	F	E	G	T	P	S	P	M	R	.	.	.	.	.	H	P	E	K	V	D	M	V	I	F	R	E	N	S	E	D	I	Y	A	G	I	E	W	P	A	G	S	P	E
Template Known Secondary structure					S	S	S	S	S	.	.	.	.	.	.	.											T	T												T	T				S	S	S	.	.	.	.	.		G	G	G										S		G	G	G	G						T	T	S
Template Predicted Secondary structure										.	.	.	.	.	.	.																																.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.								.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
														150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.		.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																						.															.														.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																						.															.														.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	K	G	R	E	G	S	G	Q	Y	E	K	A	F	D	T	E	V	Y	H	R	F	E	I	E	R	I	A	R	I	A	F	E	S	A	R	K	R	.	R	H	K	V	T	S	I	D	K	A	N	V	L	Q	.	S	S	I	L	W	R	E	I	V	N	E	I	A	.	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																						.															.														.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																						.															.														.
Template Conservation
Template Sequence		A	E	K	I	I	R	F	L	R	E	E	M	G	V	T	K	I	R	F	P	D	S	S	A	I	G	I	K	P	V	S	T	E	G	S	E	R	L	I	R	R	T	I	Q	Y	A	L	E	H	G	K	P	S	V	S	L	V	H	K	G	N	I	M	K	F	T	E	G	G	F	R	D	W	G	Y	A	L	A	E	R
Template Known Secondary structure												T	S						S		G	G	G																											T	T		S								T	T	T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		215	.	.	.																																	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Y	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	L	A	H	M	Y	I	D	N	A	T	M	Q	L	I	K	D	P	S	Q	F	D	V	L	L	C	S	N	L	F	G	D	I	L	S	D	E	C	A	M	I	T	G
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	F	A	G	R	V	F	T	W	R	Q	K	A	A	I	S	K	A	E	G	K	A	A	G	Q	K	A	E	Q	Q	A	I	A	D	G	K	L	I	I	K	D	V	I	A	D	N	F	L	Q	Q	I	L	L	R	P	E	D	Y	S	V	V	A	T	L	N	L	N	G	D	Y	V	S	D	A	L	A	A	E	V	G
Template Known Secondary structure			S	T	T	T																													T	T																				G	G	G																						T	T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	G	M	L	P	S	A	S	L	N	E	Q	G	F	G	L	Y	E	P	A	G	G	S	A	P	D	I	A	G	K	N	I	A	N	P	I	A	Q	I	L	S	L	A	L	L	L	R	Y	S	L	D	A	D	D	A	A	C	A	I	E	R	A	I	N	R	A	L	E	E	G	I	R	T	G	D	L	A	R	G
Query Conservation
Alig confidence															.																																				.
Template Conservation															.																																				.
Template Sequence		G	I	G	M	A	P	G	A	N	L	S	D	T	.	H	A	I	F	E	A	T	H	G	T	A	P	D	I	A	G	Q	G	K	A	N	P	S	S	L	I	L	S	A	V	M	M	L	E	H	.	L	G	W	G	E	A	A	Q	A	I	V	A	A	M	N	A	T	I	A	A	G	E	V	T	G	D	L	A	A	L
Template Known Secondary structure			G	G	G								S	S	.							S					T	T	T	T	T	T	T																		.	T	T																		T	T								T	T
Template Predicted Secondary structure															.																																				.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		343	.				.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		A	A	.	.	.	A	V	S	T	D	E	M	G	D	I	I	A	R	Y	V
Query Conservation				.	.	.
Alig confidence				.	.	.
Template Conservation
Template Sequence		R	G	D	V	P	A	L	S	T	T	E	F	T	A	A	L	I	R	R	F
Template Known Secondary structure		S	T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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