Job Description P30125 Confidence 100.00% Date Thu Jan 5 11:45:46 GMT 2012 Rank 7 Aligned Residues 339 % Identity 34% Template c2d1cB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase; PDBTitle: crystal structure of tt0538 protein from thermus thermophilus hb8 Resolution 1.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		S	K	N	Y	H	I	A	V	L	P	G	D	G	I	G	P	E	V	M	T	Q	A	L	K	V	L	D	A	V	R	N	R	F	A	M	R	I	T	T	S	H	Y	D	V	G	G	A	A	I	D	N	.	H	G	Q	P	L	P	P	A	T	V	E	G	C	E	Q	A	D	A	V	L	F	G	S	V	G	G	P	K
Query Conservation																																																					.
Alig confidence																															.	.	.	.																			.
Template Conservation																															.	.	.	.
Template Sequence		D	G	R	K	L	I	T	V	I	P	G	D	G	I	G	P	E	C	V	E	A	T	L	K	V	L	E	A	A	.	.	.	.	K	A	P	L	A	Y	E	V	R	E	A	G	A	S	V	F	R	R	G	I	A	S	G	V	P	Q	E	T	I	E	S	I	R	K	T	R	V	V	L	K	G	P	L	E	T	P	V
Template Known Secondary structure		T	S										S	T	T															T	.	.	.	.	T											S					T	T	T		T	T	S																								S
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		W	E	H	L	P	P	D	Q	Q	P	E	R	G	A	L	L	P	L	R	K	H	F	K	L	F	S	N	L	R	P	A	K	L	Y	Q	G	L	E	A	F	C	P	L	R	A	D	I	A	A	N	G	F	D	I	L	C	V	R	E	L	T	G	G	I	Y	F	G	Q	P	K	G	R	E	G	S	G	Q	Y	E	K
Query Conservation
Alig confidence						.	.	.	.	.	.	.																																.	.	.	.	.	.																									.	.	.	.
Template Conservation						.	.	.	.	.	.	.																																.	.	.	.	.	.																									.	.	.	.
Template Sequence		G	Y	G	E	.	.	.	.	.	.	.	K	S	A	N	V	T	L	R	K	L	F	E	T	Y	A	N	V	R	P	V	R	E	F	P	N	V	P	T	P	Y	A	.	.	.	.	.	.	G	R	G	I	D	L	V	V	V	R	E	N	V	E	D	L	Y	A	G	I	E	H	M	Q	.	.	.	.	T	P	S	V
Template Known Secondary structure		S	S	S	S	.	.	.	.	.	.	.											T	T												T	T				T	T	T	.	.	.	.	.	.	T	S											S		B	G	G	G							.	.	.	.		T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.																																.	.	.	.	.	.																									.	.	.	.
Template SS confidence
		93	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.							.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.															.
Query SS confidence																												.															.
Query Sequence		A	F	D	T	E	V	Y	H	R	F	E	I	E	R	I	A	R	I	A	F	E	S	A	R	K	R	.	R	H	K	V	T	S	I	D	K	A	N	V	L	Q	.	S	S	I	L	W	R	E	I	V	N	E	I	A	T	E	Y	P	D	V	E	L	A	H	M	Y	I	D	N	A	T	M	Q	L	I	K	D	P	S
Query Conservation																												.															.
Alig confidence																												.															.
Template Conservation
Template Sequence		A	Q	T	L	K	L	I	S	W	K	G	S	E	K	I	V	R	F	A	F	E	L	A	R	A	E	G	R	K	K	V	H	C	A	T	K	S	N	I	M	K	L	A	E	G	T	L	K	R	A	F	E	Q	V	A	Q	E	Y	P	D	I	E	A	V	H	I	I	V	D	N	A	A	H	Q	L	V	K	R	P	E
Template Known Secondary structure							B																				T	T										T	T	T		T	T														T	T		T	T	S																		G	G
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	D	V	L	L	C	S	N	L	F	G	D	I	L	S	D	E	C	A	M	I	T	G	S	M	G	M	L	P	S	A	S	L	N	E	Q	G	F	G	L	Y	E	P	A	G	G	S	A	P	D	I	A	G	K	N	I	A	N	P	I	A	Q	I	L	S	L	A	L	L	L	R	Y	S	L	D	A	D	D	A
Query Conservation
Alig confidence																																							.																																				.
Template Conservation																																							.																																				.
Template Sequence		Q	F	E	V	I	V	T	T	N	M	N	G	D	I	L	S	D	L	T	S	G	L	I	G	G	L	G	F	A	P	S	A	N	I	G	N	E	.	V	A	I	F	E	A	V	H	G	S	A	P	K	Y	A	G	K	N	V	I	N	P	T	A	V	L	L	S	A	V	M	M	L	R	Y	.	L	E	E	F	A	T
Template Known Secondary structure		G		S																		T	T	T	T		G	G	G								S	S	.							S	S				G	G	G	T	T	S	S																		.	T	T
Template Predicted Secondary structure																																							.																																				.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		A	C	A	I	E	R	A	I	N	R	A	L	E	E	G	.	I	R	T	G	D	L	A	R	G	A	A	A	V	S	T	D	E	M	G	D	I	I	A	R	Y	V	A	E	G	V
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		A	D	L	I	E	N	A	L	L	Y	T	L	E	E	G	R	V	L	T	G	D	V	V	G	Y	D	R	G	A	K	T	T	E	Y	T	E	A	I	I	Q	N	L	G	K	T	P
Template Known Secondary structure																T	S	S		B						T	T	T		B												T	T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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