Job Description P30125 Confidence 100.00% Date Thu Jan 5 11:45:46 GMT 2012 Rank 21 Aligned Residues 348 % Identity 19% Template c1zorB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase; PDBTitle: isocitrate dehydrogenase from the hyperthermophile thermotoga maritima Resolution 2.24 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	K	N	Y	H	I	A	V	L	P	G	D	G	I	G	P	E	V	M	T	Q	A	L	K	V	L	D	A	V	R	N	R	F	A	M	R	I	T	T	S	H	Y	D	V	G	G	A	A	I	D	N	H	G	Q	P	L	P	P	A	T	V	E	G	C	E	Q	A	D	A	V	L	F	G	S	V	G	G	P	K
Query Conservation
Alig confidence					.	.																											.	.	.	.
Template Conservation					.	.																											.	.	.	.
Template Sequence		V	K	N	.	.	P	I	V	E	L	D	G	D	E	M	A	R	V	M	W	K	M	I	K	E	K	L	I	L	P	Y	.	.	.	.	L	D	I	Q	L	V	Y	F	D	L	G	I	K	K	R	D	E	T	D	D	Q	I	T	I	E	A	A	K	A	I	K	K	Y	G	V	G	V	K	C	A	T	I	T	P	D
Template Known Secondary structure			S	S	.	.																							T	G	G	G	.	.	.	.																		T	T	T														S
Template Predicted Secondary structure					.	.																											.	.	.	.
Template SS confidence
		6	.	.			.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.					.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure											.	.																																																																				.	.
Query SS confidence											.	.																																																																				.	.
Query Sequence		W	E	H	L	P	P	D	Q	Q	.	.	P	E	R	G	A	L	L	P	L	R	K	H	F	K	L	F	S	N	L	R	P	A	K	L	Y	Q	G	L	E	A	F	C	P	L	R	A	D	I	A	A	N	G	F	D	I	L	C	V	R	E	L	T	G	G	I	Y	F	G	Q	P	K	G	R	E	G	S	G	.	.
Query Conservation											.	.																																																																				.	.
Alig confidence											.	.																								.										.	.	.	.	.	.																													.	.
Template Conservation																																				.										.	.	.	.	.	.
Template Sequence		A	E	R	V	K	E	Y	N	L	K	K	A	W	K	S	P	N	A	T	I	R	A	Y	L	D	G	T	V	F	R	K	P	I	M	.	V	K	N	V	P	P	L	V	K	.	.	.	.	.	.	R	W	K	K	P	I	I	I	G	R	H	A	Y	G	D	I	Y	N	A	V	E	A	K	V	E	G	P	A	E	V
Template Known Secondary structure									T		S	S														T										.		T	T	S			S	S	T	.	.	.	.	.	.	T			S									S	S	G	G	G	G								S	S
Template Predicted Secondary structure																																				.										.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.							.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
																			157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.																	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.																	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Y	E	K	A	F	D	T	E	V	Y	H	R	F	E	I	E	R	I	A	R	I	A	F	E	S	A	R	K	R	R	H	K	V	T	S	I	D	K	A	N	V	L	Q	.	S	S	I	L	W	R	E	I	V	N	E	I	A	T	E	Y	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.																	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.																	.	.
Template Conservation
Template Sequence		E	L	V	V	R	N	K	E	N	K	T	L	L	V	H	K	F	E	G	N	G	V	V	M	A	M	H	N	L	E	K	S	I	R	S	F	A	Q	S	C	I	N	Y	A	I	S	E	K	V	D	I	W	F	A	T	K	D	T	I	S	K	V	Y	H	A	Y	F	K	D	I	F	Q	E	E	V	D	K	R	K	E
Template Known Secondary structure							S	S	S										S	S																													T									T	T	T		T	T																T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
						217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure		.	.	.	.																																																																											.	.
Query SS confidence		.	.	.	.																																																																											.	.
Query Sequence		.	.	.	.	P	D	V	E	L	A	H	M	Y	I	D	N	A	T	M	Q	L	I	K	D	P	S	Q	F	D	V	L	L	C	S	N	L	F	G	D	I	L	S	D	E	C	A	M	I	T	G	S	M	G	M	L	P	S	A	S	L	N	E	Q	G	F	G	L	Y	E	P	A	G	G	S	A	P	D	I	.	.
Query Conservation		.	.	.	.																																																																											.	.
Alig confidence		.	.	.	.																									.																																																		.	.
Template Conservation																														.
Template Sequence		E	L	E	K	A	G	V	N	Y	R	Y	M	L	I	D	D	A	A	A	Q	I	L	R	S	E	G	G	M	.	L	W	A	C	M	N	Y	E	G	D	I	M	S	D	M	I	A	S	G	F	G	S	L	G	L	M	T	S	V	L	V	S	P	D	G	V	Y	E	F	E	A	A	H	G	T	V	R	R	H	Y	Y
Template Known Secondary structure							T																		S				S	.																					S		G	G	G								T	T								S	S
Template Predicted Secondary structure																														.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
						291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.								.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.						.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure		.	.	.	.																									.	.	.	.	.	.	.																															.	.	.	.	.
Query SS confidence		.	.	.	.																									.	.	.	.	.	.	.																															.	.	.	.	.
Query Sequence		.	.	.	.	A	G	K	N	I	A	N	P	I	A	Q	I	L	S	L	A	L	L	L	R	Y	S	L	D	.	.	.	.	.	.	.	A	D	D	A	A	C	A	I	E	R	A	I	N	R	A	L	E	E	G	I	R	T	G	D	L	A	R	G	A	A	.	.	.	.	.	A	V	S	T	D	E	M	G	D	I
Query Conservation		.	.	.	.																									.	.	.	.	.	.	.																															.	.	.	.	.
Alig confidence		.	.	.	.																						.			.	.	.	.	.	.	.																															.	.	.	.	.
Template Conservation																											.
Template Sequence		R	Y	L	K	G	E	K	T	S	T	N	P	T	A	S	I	F	A	W	T	G	A	I	R	K	.	R	G	E	L	D	G	T	P	E	V	C	E	F	A	D	K	L	E	K	A	V	I	N	T	I	E	S	G	V	I	T	K	D	L	Q	P	F	T	E	P	P	I	D	K	Y	V	T	L	E	E	F	I	D	E
Template Known Secondary structure						T																					.						T		T	T																		T	T				G	G	G	T	T	T		S	S			S
Template Predicted Secondary structure																											.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		355	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	R	Y	V	A	E	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	K	N	L	E	K	L	L
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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