Job Description P30125 Confidence 98.31% Date Thu Jan 5 11:45:46 GMT 2012 Rank 32 Aligned Residues 258 % Identity 16% Template c1yxoB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxythreonine-4-phosphate dehydrogenase 1; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic protein pdxa2 pa0593 Resolution 2.01 Å

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		4	.	.	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.															.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.
Predicted Secondary structure												.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Y	H	I	A	V	L	P	G	D	.	.	G	I	G	P	E	V	M	T	Q	A	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	D	A	V	R	N	R	F	A	M	R	I	T	T	S	H	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	R	F	A	L	T	P	G	E	P	A	G	I	G	P	D	L	C	L	L	L	A	R	S	A	Q	P	H	P	L	I	A	I	A	S	R	T	L	L	Q	E	R	A	G	Q	L	G	L	A	I	D	L	K	D	V	S	P	A	A	W	P	E	R	P	A	K	A	G	Q	L	Y	V	W	D	T	P	L	A	A
Template Known Secondary structure											S	T	T	S	S								G	G	G	S			S	S																			T									B	T	T	B				S				T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		1002	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.
							44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																									.	.
Query SS confidence		.	.	.	.	.																									.	.
Query Sequence		.	.	.	.	.	D	V	G	G	A	A	I	D	N	H	G	Q	P	L	P	P	A	T	V	E	G	C	E	Q	.	.	A	D	A	V	L	F	G	S	V	G	G	P	K	W	E	H	L	P	P	D	Q	Q	P	E	R	G	A	L	L	P	L	R	K	H	F	K	L	F	S	N	L	R	P	A	K	L	Y	Q	G
Query Conservation		.	.	.	.	.																									.	.
Alig confidence		.	.	.	.	.															.										.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	R	P	G	Q	L	D	R	A	N	A	A	Y	V	L	E	T	L	.	T	R	A	G	Q	G	C	L	D	G	H	F	A	G	X	I	T	A	P	V	H	K	G	V	I	N	E	A	G	I	P	F	S	G	H	T	E	F	L	A	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	H
Template Known Secondary structure				B	T	T	B			G	G	G									.										T	S		S															T	T				S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																					.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1082	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100		.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.																	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.
Predicted Secondary structure																																																																								.	.	.	.
Query SS confidence																																																																								.	.	.	.
Query Sequence		L	E	A	F	C	P	L	R	A	D	I	A	A	N	G	F	D	I	L	C	V	R	E	L	T	G	G	I	Y	F	G	Q	P	K	G	R	E	G	S	G	Q	Y	E	K	A	F	D	T	E	V	Y	H	R	F	E	I	E	R	I	A	R	I	A	F	E	S	A	R	K	R	.	.	.	.	R	H	K	V	T	S
Query Conservation																																																																								.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.															.	.												.	.	.	.	.	.																					.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.															.	.												.	.	.	.	.	.
Template Sequence		T	A	Q	V	V	.	.	.	.	.	.	.	.	.	.	.	.	X	X	L	A	T	R	G	L	R	V	A	L	A	T	.	.	T	H	L	P	L	R	E	V	A	D	A	.	.	.	.	.	.	I	S	D	E	R	L	T	R	V	A	R	I	L	H	A	D	L	R	D	K	F	G	I	A	H	P	R	I	L	V
Template Known Secondary structure			S				.	.	.	.	.	.	.	.	.	.	.	.						T	T						S	S	.	.		S	S									.	.	.	.	.	.																				T	S			S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.															.	.												.	.	.	.	.	.
Template SS confidence
		1145	.	.	.	.													1150	.	.	.	.	.	.	.	.	.	1160	.	.	.			.	.	.	.	.	.	1170	.	.	.	.							.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.
		193	.											.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	.	.	.	.	.	.	.	.	.	.	K	A	N	V	L	Q	S	S	I	L	W	R	E	I	V	N	E	I	A	T	E	Y	P	D	V	E	L	A	H	M	Y	I	D	N	A	T	M	Q	L	I	K	D	P	S	Q	F	D	V	L	L	C	S	N	L	F	G	D	I	L	S	D	E	C	A	M	I	T	G
Query Conservation				.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.						.	.																									.										.	.									.	.			.	.	.	.
Template Conservation																			.	.																									.										.	.									.	.			.	.	.	.
Template Sequence		C	G	L	N	P	H	A	G	E	G	G	H	L	G	R	E	E	.	.	I	E	V	I	E	P	C	L	E	R	L	R	G	E	G	L	D	L	I	G	P	L	P	A	.	D	T	L	F	T	P	K	H	L	.	.	E	H	C	D	A	V	L	A	.	.	X	Y	.	.	.	.	H	D	Q	G	L	P	V	L	K
Template Known Secondary structure				S	S	G	G	G	G	G	G	G	T	S		S			.	.			T											T	T										.				S	S					.	.	T	T		S					.	.	S	S	.	.	.	.
Template Predicted Secondary structure																			.	.																									.										.	.									.	.			.	.	.	.
Template SS confidence
		1205	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.			.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.		.	.	.	.	1250	.	.	.	.			.	.	.	.	.	1260	.	.			.	.					.	.	.	.	.	1270	.	.	.
		263	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		S	M	G	M	L	P	S	A	S	L	.	.	N	E	Q	G	F	G	L	Y	E	P	A	G	G	S	A	P	D	I	A	G	K	N	I	A	N	P	I	A	Q	I	L	S	L	A	L	L	L	R
Query Conservation												.	.
Alig confidence												.	.				.
Template Conservation																	.
Template Sequence		Y	K	G	F	G	A	A	V	N	V	T	L	G	L	P	.	I	I	R	T	S	V	D	H	G	T	A	L	D	L	A	G	S	G	R	I	D	S	G	S	L	Q	V	A	L	E	T	A	Y	Q
Template Known Secondary structure				T	T	T								T	S	S	.	S						S	S				G	G	G	T	T	S
Template Predicted Secondary structure																	.
Template SS confidence
		1274	.	.	.	.	.	1280	.	.	.	.	.	.	.	.		.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions