Job Description P30125 Confidence 100.00% Date Thu Jan 5 11:45:46 GMT 2012 Rank 17 Aligned Residues 323 % Identity 38% Template c1x0lB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:homoisocitrate dehydrogenase; PDBTitle: crystal structure of tetrameric homoisocitrate dehydrogenase from an2 extreme thermophile, thermus thermophilus Resolution 1.85 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	H	I	A	V	L	P	G	D	G	I	G	P	E	V	M	T	Q	A	L	K	V	L	D	A	V	R	N	R	F	A	M	R	I	T	T	S	H	Y	D	V	G	G	A	A	I	D	N	H	G	Q	P	L	P	P	A	T	V	E	G	C	E	Q	A	D	A	V	L	F	G	S	V	G	G	P	K	W	E	H
Query Conservation
Alig confidence																													.	.	.	.																																																.	.
Template Conservation																													.	.	.	.																																																.	.
Template Sequence		A	Y	R	I	C	L	I	E	G	D	G	I	G	H	E	V	I	P	A	A	R	R	V	L	E	A	T	.	.	.	.	G	L	P	L	E	F	V	E	A	E	A	G	W	E	T	F	E	R	R	G	T	S	V	P	E	E	T	V	E	K	I	L	S	C	H	A	T	L	F	G	A	A	T	V	P	G	F	.	.
Template Known Secondary structure											S	T	T															T	.	.	.	.	T											S								S	S	S	S											S	S										T	T		.	.
Template Predicted Secondary structure																													.	.	.	.																																																.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	P	D	Q	Q	P	E	R	G	A	L	L	P	L	R	K	H	F	K	L	F	S	N	L	R	P	A	K	L	Y	Q	G	L	E	A	F	C	P	L	R	A	D	I	A	A	N	G	F	D	I	L	C	V	R	E	L	T	G	G	I	Y	F	G	Q	P	K	G	R	E	G	S	G	Q	Y	E	K	A	F	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	F	G	A	I	R	Y	L	R	R	R	L	D	L	Y	A	N	V	R	P	A	K	S	R	P	V	P	G	S	.	.	.	.	.	.	.	.	.	R	P	G	V	D	L	V	I	V	R	E	N	T	E	G	L	Y	V	E	Q	E	R	R	Y	.	.	.	.	.	L	D	V	A	I	A
Template Known Secondary structure		.	.	.	.	.	.	.	.												T												S	S	T	T		.	.	.	.	.	.	.	.	.		T	T										G	G	G	T									.	.	.	.	.	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template SS confidence
										81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.										.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																									.															.
Query SS confidence																									.															.
Query Sequence		T	E	V	Y	H	R	F	E	I	E	R	I	A	R	I	A	F	E	S	A	R	K	R	.	R	H	K	V	T	S	I	D	K	A	N	V	L	Q	.	S	S	I	L	W	R	E	I	V	N	E	I	A	T	E	Y	P	D	V	E	L	A	H	M	Y	I	D	N	A	T	M	Q	L	I	K	D	P	S	Q	F	D
Query Conservation																									.															.
Alig confidence																									.															.
Template Conservation
Template Sequence		D	A	V	I	S	K	K	A	S	E	R	I	G	R	A	A	L	R	I	A	E	G	R	P	R	K	T	L	H	I	A	H	K	A	N	V	L	P	L	T	Q	G	L	F	L	D	T	V	K	E	V	A	K	D	F	P	L	V	N	V	Q	D	I	I	V	D	N	C	A	M	Q	L	V	M	R	P	E	R	F	D
Template Known Secondary structure																							T	S	T	T									T	T	T		T	T														T	T		T	T	S																		G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	L	C	S	N	L	F	G	D	I	L	S	D	E	C	A	M	I	T	G	S	M	G	M	L	P	S	A	S	L	N	E	Q	G	F	G	L	Y	E	P	A	G	G	S	A	P	D	I	A	G	K	N	I	A	N	P	I	A	Q	I	L	S	L	A	L	L	L	R	Y	S	L	D	A	D	D	A	A	C	A
Query Conservation
Alig confidence																																				.												.	.																							.
Template Conservation																																				.												.	.																							.
Template Sequence		V	I	V	T	T	N	L	L	G	D	I	L	S	D	L	A	A	G	L	V	G	G	L	G	L	A	P	S	G	N	I	G	D	T	.	T	A	V	F	E	P	V	H	G	S	A	.	.	I	A	G	K	G	I	A	N	P	T	A	A	I	L	S	A	A	M	M	L	D	Y	.	L	G	E	K	E	A	A	K	R
Template Known Secondary structure																						T		G	G	G								S	S	.							S	S				.	.			S	S	S																		.		T
Template Predicted Secondary structure																																				.												.	.																							.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	R	A	I	N	R	A	L	E	E	G	I	R	T	G	D	L	A	R	G	A	A	A	V	S	T	D	E	M	G	D	I	I	A	R	Y	V	A	E
Query Conservation
Alig confidence																								.	.	.
Template Conservation																								.	.	.
Template Sequence		V	E	K	A	V	D	L	V	L	E	R	G	P	R	T	P	D	L	G	G	D	A	.	.	.	T	T	E	A	F	T	E	A	V	V	E	A	L	K	S
Template Known Secondary structure												T	S				G	G	G	T				.	.	.															T
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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