Job Description P30125 Confidence 100.00% Date Thu Jan 5 11:45:46 GMT 2012 Rank 19 Aligned Residues 346 % Identity 30% Template c1tyoA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: isocitrate dehydrogenase from the hyperthermophile aeropyrum pernix in2 complex with etheno-nadp Resolution 2.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.
Query SS confidence																																		.	.	.
Query Sequence		S	K	N	Y	H	I	A	V	L	P	G	D	G	I	G	P	E	V	M	T	Q	A	L	K	V	L	D	A	V	R	N	R	.	.	.	F	A	M	R	I	T	T	S	H	Y	D	V	G	G	A	A	I	D	N	H	G	Q	P	L	P	P	A	T	V	E	G	C	E	Q	A	D	A	V	L	F	G	S	V	G	G
Query Conservation																																		.	.	.
Alig confidence																																		.	.	.
Template Conservation
Template Sequence		P	D	N	P	V	V	A	F	I	R	G	D	G	V	G	P	E	V	V	E	S	A	L	K	V	V	D	A	A	V	K	K	V	Y	G	G	S	R	R	I	V	W	W	E	L	L	A	G	H	L	A	R	E	K	C	G	E	L	L	P	K	A	T	L	E	G	I	R	L	A	R	V	A	L	K	G	P	L	E	T
Template Known Secondary structure			S	S	B								S	T	T																					T	T	S											S								S	S	S	S												S
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		P	K	W	E	H	L	P	P	D	Q	Q	P	E	R	G	A	L	L	P	L	R	K	H	F	K	L	F	S	N	L	R	P	A	K	L	Y	Q	G	L	E	A	F	C	P	L	R	A	D	I	A	A	N	G	F	D	I	L	C	V	R	E	L	T	G	G	I	Y	F	G	Q	P	K	G	R	E	G	S	G	.	.
Query Conservation																																																																																.	.
Alig confidence								.	.	.	.	.	.	.																															.	.	.	.	.	.																														.	.
Template Conservation								.	.	.	.	.	.	.																															.	.	.	.	.	.
Template Sequence		P	V	G	T	G	Y	.	.	.	.	.	.	.	R	S	L	N	V	A	I	R	Q	A	L	D	L	Y	A	N	I	R	P	V	R	Y	Y	G	Q	P	A	P	H	K	.	.	.	.	.	.	Y	A	D	R	V	D	M	V	I	F	R	E	N	T	E	D	V	Y	A	G	I	E	W	P	H	D	S	P	E	A	A
Template Known Secondary structure			T	T	S		T	.	.	.	.	.	.	.	T											T												S				S		T	.	.	.	.	.	.	T	G	G	G										S	S	S	G	G	G						T	T	S
Template Predicted Secondary structure								.	.	.	.	.	.	.																															.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
																157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.															.																			.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.															.																			.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Y	E	K	A	F	D	T	E	V	Y	H	R	F	E	I	E	R	I	A	R	I	A	F	E	S	A	R	K	R	.	R	H	K	V	T	S	I	D	K	A	N	V	L	Q	.	S	S	I	L	W	R	E	I	V	N	E	I	A	T	E	Y	P	D	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.															.																			.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.															.																			.	.
Template Conservation
Template Sequence		R	I	R	R	F	L	A	E	E	F	G	I	S	I	R	E	D	A	G	I	G	V	K	P	I	S	R	F	A	T	R	R	L	M	E	R	A	L	E	W	A	L	R	N	G	N	T	V	V	T	I	M	H	K	G	N	I	M	K	Y	T	E	G	A	F	M	R	W	A	Y	E	V	A	L	E	K	F	R	E	H
Template Known Secondary structure																	T	T																												T										T	T	T	S	T	T	T																S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
																					219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	L	A	H	M	Y	I	D	N	A	T	M	Q	L	I	K	D	P	S	Q	F	D	V	L	L	C	S	N	L	F	G	D	I	L	S	D	E	C	A	M	I	T	G	S	M	G	M	L	P	S	A	S	L	N	E	Q	G	F	G	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																										.
Template Conservation																																																																														.
Template Sequence		V	V	T	E	Q	E	V	Q	E	K	Y	G	G	V	R	P	E	G	K	I	L	V	N	D	R	I	A	D	N	M	L	Q	Q	I	I	T	R	P	W	D	Y	Q	V	I	V	A	P	N	L	N	G	D	Y	I	S	D	A	A	S	A	L	V	G	G	I	G	M	A	A	G	M	N	M	G	D	G	.	I	A	V
Template Known Secondary structure												S	T	T				T	T																				G	G	G		S																				T	T		G	G	G								S	S	.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																.																																		.	.	.
Query SS confidence																																.																																		.	.	.
Query Sequence		Y	E	P	A	G	G	S	A	P	D	I	A	G	K	N	I	A	N	P	I	A	Q	I	L	S	L	A	L	L	L	.	R	Y	S	L	D	A	D	D	A	A	C	A	I	E	R	A	I	N	R	A	L	E	E	G	I	R	T	G	D	L	A	R	G	.	.	.	A	A	A	V	S	T	D	E	M	G	D	I	I
Query Conservation																																.																																		.	.	.
Alig confidence																																.			.																															.	.	.
Template Conservation																																			.
Template Sequence		A	E	P	V	H	G	T	A	P	K	Y	A	G	K	D	L	I	N	P	S	A	E	I	L	S	A	S	L	L	I	G	E	F	.	M	G	W	R	E	V	K	S	I	V	E	Y	A	I	R	K	A	V	Q	S	K	K	V	T	Q	D	L	A	R	H	M	P	G	V	Q	P	L	R	T	S	E	Y	T	E	T	L
Template Known Secondary structure					S	S				G	G	G	T	T	S	S		S															T	T	.	S																			T	T			B					T	T	S	T	T				B
Template Predicted Secondary structure																																			.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		356	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	Y	V	A	E	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	Y	I	D	E	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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