Job Description P02413 Confidence 100.00% Date Thu Jan 5 10:57:33 GMT 2012 Rank 7 Aligned Residues 129 % Identity 24% Template c1s1iV_ PDB info PDB header:ribosome Chain: V: PDB Molecule:60s ribosomal protein l28; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. Resolution 11.70 Å

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		15	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.
Predicted Secondary structure													.							.															.	.																						.																				.	.
Query SS confidence													.							.															.	.																						.																				.	.
Query Sequence		A	G	K	R	L	G	R	G	I	G	S	.	G	L	G	K	T	G	.	G	R	G	H	K	G	Q	K	S	R	S	G	G	G	.	.	V	R	R	G	F	E	G	G	Q	M	P	L	Y	R	R	L	P	K	F	G	F	.	T	S	R	K	A	A	I	T	A	E	I	R	L	S	D	L	A	K	V	.	.	E	G
Query Conservation													.							.															.	.																						.																				.	.
Alig confidence													.							.															.	.																						.																				.	.
Template Conservation
Template Sequence		T	K	T	R	K	H	R	G	H	V	S	A	G	K	G	R	I	G	K	H	R	K	H	P	G	G	R	G	M	A	G	G	E	H	H	H	R	I	N	M	D	K	Y	H	P	G	Y	F	G	K	V	G	M	R	Y	F	H	K	Q	Q	A	H	F	W	K	P	V	L	N	L	D	K	L	W	T	L	I	P	E	D
Template Known Secondary structure			T	T	T			T	T	S	S	S	S	S	S			S	S		S		S		S	S	S	S	S	S			S	S			S	S	S	S		S				S	S	S	S			S	S				S	S	S	S	T	T	S								T	T						T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																	.	.	.	.																		.
Query SS confidence																	.	.	.	.																		.
Query Sequence		G	V	V	D	L	N	T	L	K	A	A	N	I	I	G	.	.	.	.	I	Q	I	E	F	A	K	V	I	L	A	G	E	V	T	T	P	.	V	T	V	R	G	L	R	V	T	K	G	A	R	A	A	I	E	A	A	G	G	K	I	E
Query Conservation																	.	.	.	.																		.
Alig confidence																	.	.	.	.																		.
Template Conservation
Template Sequence		K	R	D	Q	Y	L	K	S	A	S	K	E	T	A	P	V	I	D	T	L	A	A	G	Y	G	K	I	L	G	K	G	R	I	P	N	V	P	V	I	V	K	A	R	F	V	S	K	L	A	E	E	K	I	R	A	A	G	G	V	V	E
Template Known Secondary structure						S	S			S	S								S				S	S								S	S			S	S						S	S				S	T	T	T	T	T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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