Phyre 2 alignment of P02413 with c1s1iD

Job Description P02413
Confidence 3.92% Date Thu Jan 5 10:57:33 GMT 2012

Rank 42 Aligned Residues 57

% Identity 16% Template c1s1iD_

PDB info PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l4-b; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.

Resolution 11.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.
Predicted Secondary structure																						.	.	.																														.	.	.
Query SS confidence																						.	.	.																														.	.	.
Query Sequence	S	P	A	E	G	S	K	K	A	G	K	R	L	G	R	G	I	G	S	G	L	.	.	.	G	K	T	G	G	R	G	H	K	G	Q	K	S	R	S	G	G	G	V	R	R	G	F	E	G	G	Q	M	P	.	.	.	L	Y	R	R	L	P	K
Query Conservation																						.	.	.																														.	.	.
Alig confidence																						.	.	.																														.	.	.
Template Conservation
Template Sequence	S	E	K	A	G	H	Q	T	S	A	E	S	W	G	T	G	R	A	V	A	R	I	P	R	V	G	G	G	G	T	G	R	S	G	Q	G	A	F	G	N	M	C	R	G	G	R	M	F	A	P	T	K	T	W	R	K	W	N	V	K	V	N	H
Template Known Secondary structure		T	T	S	S										S	S	S	S				S				S	S	S	S				S	S				S	T	T	S					S							S		S								S
Template Predicted Secondary structure
Template SS confidence
	52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions