Job Description P75767 Confidence 100.00% Date Thu Jan 5 12:13:55 GMT 2012 Rank 5 Aligned Residues 219 % Identity 29% Template c2p0yA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein lp_0780; PDBTitle: crystal structure of q88yi3_lacpl from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr6 Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	R	V	V	A	L	G	G	G	H	G	L	G	R	V	L	S	S	L	S	S	L	G	S	R	L	T	G	I	V	T	T	T	D	N	G	G	S	T	G	R	I	R	R	S	E	G	G	I	A	W	G	D	M	R	N	C	L	N	Q	L	I	T	E	P	S	V	A	S	A	M	F	E	Y	R	F	G	G	N
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Sequence		R	P	K	I	V	V	I	G	G	G	T	G	L	P	V	V	L	N	G	L	R	K	Q	A	V	D	I	T	A	V	V	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	V	X	V	A	L	S	S	W	P	D	L	Y	K	D	I	F	Q	.	.	.	.	.	.
Template Known Secondary structure											G	G	G											S	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S						T		.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																							.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	L	S	G	H	N	L	G	N	L	M	L	K	A	L	D	H	L	S	V	R	P	L	E	A	I	N	L	I	R	N	L	L	K	V	D	T	H	L	I	P	M	S	E	H	P	V	D	L	M	A	I	D	D	Q	G	H	E	V	Y	G	E	V	N	I	D	Q	L	T	T	P	I	Q	E	L	L	L	T	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.																									.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.																									.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	G	N	L	I	.	.	.	.	.	.	.	.	.	G	V	F	D	A	V	Q	E	L	S	N	X	X	Q	V	D	G	H	V	Y	P	A	L	T	.	.	.	.	L	H	G	K	F	S	D	G	T	.	.	.	.	.	.	.	.	.	.	.	H	K	S	L	E	R	V	W	V	T	P
Template Known Secondary structure		.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.													T	T		S	S								.	.	.	.						S	S			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.																									.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										99	100	.	.										.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.												.	.	.	.	140	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	P	A	T	R	E	A	V	H	A	I	N	E	A	D	L	I	I	I	G	P	G	S	F	Y	T	S	L	M	P	I	L	L	L	K	E	I	A	Q	A	L	R	R	T	P	A	P	M	V	Y	I	G	N	L	G	R	E	L	S	L	P	A	A	N	L	K	L	E	S	K	L	A	I	M	E	Q	Y	V	G
Query Conservation
Alig confidence			.	.																																																							.	.		.																			.
Template Conservation			.	.																																																							.	.		.																			.
Template Sequence		Q	.	.	A	V	Q	P	V	I	D	A	I	X	A	A	D	Q	I	V	L	G	P	G	S	L	F	T	S	I	L	P	N	L	T	I	G	N	I	G	R	A	V	C	E	S	D	A	E	V	V	Y	I	C	N	I	X	T	.	.	G	.	E	T	D	N	F	S	D	A	D	H	V	R	V	L	N	R	H	L	.
Template Known Secondary structure			.	.													S						S	S											S	S											S	S								S	B		.	.		.		S	T	T		B											T		.
Template Predicted Secondary structure			.	.																																																							.	.		.																			.
Template SS confidence
		177			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.																			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	V	I	D	A	V	I	V	G	P	K	V	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	V	K	E	R	I	V	I	Q	E	V	L	E	A	S	D	I	P	Y	R	H	D	R	Q	L	L	H	N	A	L	E	K	A	L	Q	A	L	G
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation		.	.	.																																													.	.	.	.	.	.
Template Sequence		.	.	.	I	N	T	V	L	V	N	T	E	K	V	P	E	D	Y	X	D	F	H	S	K	Q	V	S	H	D	F	R	G	L	R	E	Q	N	C	R	V	I	S	S	N	F	L	K	.	.	.	.	.	.	L	H	D	G	D	Q	V	V	A	E	L	X	N	L	V	G	H	S	D
Template Known Secondary structure		.	.	.									S													B		B								T	T	T											.	.	.	.	.	.				S															T
Template Predicted Secondary structure		.	.	.																																													.	.	.	.	.	.
Template SS confidence
					257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300							.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions