Job Description P04152 Confidence 100.00% Date Thu Jan 5 10:58:12 GMT 2012 Rank 16 Aligned Residues 234 % Identity 31% Template d1zeta2 SCOP info DNA/RNA polymerases DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), catalytic domain Resolution 2.30

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	A	L	C	D	V	N	A	F	Y	A	S	C	E	T	V	F	R	P	D	L	W	G	K	P	V	V	V	L	S	N	N	D	G	C	V	I	A	R	N	A	E	A	K	A	L	G	V	K	M	G	D	P	W	F	K	Q	K	D	L	F	R	R	C	G	V	V	C	F	S	S	N	Y	E	L	Y	A	D	M
Query Conservation
Alig confidence																																	.	.																																	.
Template Conservation																																	.	.																																	.
Template Sequence		V	I	V	H	V	D	L	D	C	F	Y	A	Q	V	E	M	I	S	N	P	E	L	K	D	K	P	L	G	V	Q	Q	.	.	K	Y	L	V	V	T	C	N	Y	E	A	R	K	L	G	V	K	K	L	M	N	V	R	D	A	K	E	K	C	P	Q	L	.	V	L	V	N	G	E	D	L	T	R	Y	R	E	M
Template Known Secondary structure									T	T											G	G	G	T	T	S						S	.	.	S	S	B										T	T	T			S		B								T		T	T		.
Template Predicted Secondary structure																																	.	.																																	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																																				.	.	120	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	N	R	V	M	S	T	L	E	E	L	S	P	R	V	E	I	Y	S	I	D	E	A	F	C	D	L	T	G	V	R	N	C	R	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	G	R	E	I	R	A
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	Y	K	V	T	E	L	L	E	E	F	S	P	V	V	E	R	L	G	F	D	E	N	F	V	D	L	T	E	M	V	E	K	R	L	Q	Q	L	Q	S	D	E	L	S	A	V	T	V	S	G	H	V	Y	N	N	Q	S	I	N	L	L	D	V	L	H	I	R	L	L	V	G	S	Q	I	A	A	E	M	R	E
Template Known Secondary structure														S						T	T	T																	S		S	S	G	G	G	G					S			G	G	G					T	T
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		T	V	L	Q	R	T	H	L	T	V	G	V	G	I	A	Q	T	K	T	L	A	K	L	A	N	H	A	A	K	K	W	Q	R	Q	T	G	G	V	V	D	L	S	N	L	E	R	Q	R	K	L	M	S	A	L	.	P	V	D	D	V	W	G	I	G	R	R	I	S	K	K	L	D	A	M	G	I	K	T	V	L
Query Conservation																																																								.
Alig confidence																																		.	.	.	.	.	.																	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		A	M	Y	N	Q	L	G	L	T	G	C	A	G	V	A	S	N	K	L	L	A	K	L	V	S	G	V	F	K	P	N	Q	.	.	.	.	.	.	Q	T	V	L	L	P	E	S	C	Q	H	L	I	H	S	L	N	H	I	K	E	I	P	G	I	G	Y	K	T	A	K	C	L	E	A	L	G	I	N	S	V	R
Template Known Secondary structure																	S	S									T	S	S		S	S		.	.	.	.	.	.						G	G	G						T	T		S	S	G	G	G	S	T	T											T	T	T			S
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.							.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		D	L	A	D	T	D	I	R	F	I	R	K	H	F	N	V	V	.	L	E	R	T	V	R	E	L	R	G	E	P	C	L	Q	L	E	E	F	A	P	T
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		D	L	Q	T	F	S	P	K	I	L	E	K	E	L	G	I	S	V	A	Q	R	I	Q	K	L	S	F	G	E	D	N	S	P	V	I	L	S	G	P	P
Template Known Secondary structure						S																						T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions