Job Description P04152 Confidence 100.00% Date Thu Jan 5 10:58:12 GMT 2012 Rank 14 Aligned Residues 230 % Identity 29% Template d1k1sa2 SCOP info DNA/RNA polymerases DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), catalytic domain Resolution 2.80

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		M	F	A	L	C	D	V	N	A	F	Y	A	S	C	E	T	V	F	R	P	D	L	W	G	K	P	V	V	V	L	S	.	.	N	N	D	G	C	V	I	A	R	N	A	E	A	K	A	L	G	V	K	M	G	D	P	W	F	K	Q	K	D	L	F	R	R	C	G	V	V	C	F	S	S	N	Y	E	L	Y	A
Query Conservation																																	.	.
Alig confidence																																	.	.																																		.	.
Template Conservation																																																																				.	.
Template Sequence		I	V	I	F	V	D	F	D	Y	F	F	A	Q	V	E	E	V	L	N	P	Q	Y	K	G	K	P	L	V	V	S	V	Y	S	G	T	S	G	A	V	A	T	A	N	Y	E	A	R	K	L	G	V	K	A	G	M	P	I	I	K	A	M	Q	I	A	P	S	.	.	A	I	Y	V	P	M	R	K	P	I	Y	E
Template Known Secondary structure									T	T									S		G	G	G	T	T	S									.														T	T	T			T	T								T	T		T	T	.	.	S
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		D	M	S	N	R	V	M	S	T	L	E	E	L	S	P	R	V	E	I	Y	S	I	D	E	A	F	C	D	L	T	G	V	.	.	R	N	C	R	D	L	T	D	F	G	R	E	I	R	A	T	V	L	Q	R	T	H	L	T	V	G	V	G	I	A	Q	T	K	T	L	A	K	L	A	N	H	A	A	K	K	W
Query Conservation																																		.	.
Alig confidence																																		.	.
Template Conservation
Template Sequence		A	F	S	N	R	I	M	N	L	L	N	K	H	A	D	K	I	E	V	A	S	I	D	E	A	Y	L	D	V	T	N	K	V	E	G	N	F	E	N	G	I	E	L	A	R	K	I	K	Q	E	I	L	E	K	E	K	I	T	V	T	V	G	V	A	P	N	K	I	L	A	K	I	I	A	D	K	S	K	P	N
Template Known Secondary structure													T	T		S							T	T							T	T	T	T	T	T																														S	S										T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		Q	R	Q	T	G	G	V	V	D	L	S	N	L	E	R	Q	R	K	L	M	S	A	L	P	V	D	D	V	W	G	I	G	R	R	I	S	K	K	L	D	A	M	G	I	K	T	V	L	D	L	A	D	T	D	I	R	F	I	R	K	H	F	N	V	V	.	L	E	R	T	V	R	E	L	R	G	E	P	C	L
Query Conservation																																																																			.
Alig confidence			.	.	.	.	.	.																																																											.
Template Conservation			.	.	.	.	.	.
Template Sequence		G	.	.	.	.	.	.	L	G	V	I	R	P	T	E	V	Q	D	F	L	N	E	L	D	I	D	E	I	P	G	I	G	S	V	L	A	R	R	L	N	E	L	G	I	Q	K	L	R	D	I	L	S	K	N	Y	N	E	L	E	K	I	T	G	K	A	K	A	L	Y	L	L	K	L	A	Q	N	K	Y	S	E
Template Known Secondary structure			.	.	.	.	.	.						T	T	S							T		B	G	G	G	S	T	T	S											T	T			B	G	G	G	G	G	G	S																					T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.
Template SS confidence
		163							.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		236	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		237	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions