Job Description P04152 Confidence 100.00% Date Thu Jan 5 10:58:12 GMT 2012 Rank 8 Aligned Residues 339 % Identity 22% Template c3mr2A_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm) Resolution 1.83 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70						.	.
Predicted Secondary structure																																				.	.	.																																					.	.	.	.	.
Query SS confidence																																				.	.	.																																					.	.	.	.	.
Query Sequence		M	F	A	L	C	D	V	N	A	F	Y	A	S	C	E	T	V	F	R	P	D	L	W	G	K	P	V	V	V	L	S	N	N	D	.	.	.	G	C	V	I	A	R	N	A	E	A	K	A	L	G	V	K	M	G	D	P	W	F	K	Q	K	D	L	F	R	R	C	G	V	V	C	F	.	.	.	.	.	S	S
Query Conservation																																				.	.	.																																					.	.	.	.	.
Alig confidence																																				.	.	.																																					.	.	.	.	.
Template Conservation
Template Sequence		V	V	A	L	V	D	M	D	C	F	F	V	Q	V	E	Q	R	Q	N	P	H	L	R	N	K	P	C	A	V	V	Q	Y	K	S	W	K	G	G	G	I	I	A	V	S	Y	E	A	R	A	F	G	V	T	R	S	M	W	A	D	D	A	K	K	L	C	P	D	L	L	L	A	Q	V	R	E	S	R	G	K	A
Template Known Secondary structure									T	T											G	G	G	T	T	S								T	T	T	T	T												T	T	T			T	T		B									T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Y	E	L	Y	A	D	M	S	N	R	V	M	S	T	L	E	E	L	S	P	R	V	E	I	Y	S	I	D	E	A	F	C	D	L	T	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		N	L	T	K	Y	R	E	A	S	V	E	V	M	E	I	M	S	R	F	A	V	.	I	E	R	A	S	I	D	E	A	Y	V	D	L	T	S	A	V	Q	E	R	L	Q	K	L	Q	G	Q	P	I	S	A	D	L	L	P	S	T	Y	I	E	G	L	P	Q	G	P	E	E	T	V	Q	K	E	G	M	R	K	Q
Template Known Secondary structure																			T	T	S		.						T	T																	S	S	S					G	G	G		T	T				T	T		S					G	G	G	S
Template Predicted Secondary structure																							.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
																				111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	C	R	D	L	T	D	F	G	R	E	I	R	A	T	V	L	Q	R	T	H	L	T	V	G	V	G	I	A	Q	T	K	T	L	A	K	L	A	N	H	A	A	K	K	W	Q	R	Q	T	G	G	V	V	D	L	S	N	L	E	R	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.
Template Sequence		G	L	F	Q	W	L	D	S	L	Q	I	D	N	L	T	S	P	D	L	Q	L	T	V	G	A	V	I	V	E	E	M	R	A	A	I	E	R	E	T	G	F	Q	C	S	A	G	I	S	H	N	K	V	L	A	K	L	A	C	G	L	N	K	P	N	R	.	.	.	.	.	.	Q	T	L	V	S	H	G	S	V
Template Known Secondary structure												S	S		T	T																									S									S	S											T		S	S		.	.	.	.	.	.						G	G	G
Template Predicted Secondary structure																																																																			.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.							.	.	.	.	.	240	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																								.																										.
Query SS confidence																								.																										.
Query Sequence		R	K	L	M	S	A	L	P	V	D	D	V	W	G	I	G	R	R	I	S	K	K	.	L	D	A	M	G	I	K	T	V	L	D	L	A	D	T	D	I	R	F	I	R	K	H	F	N	.	V	V	L	E	R	T	V	R	E	L	R	G	E	P	C	L	Q	L	E	E	F	A	P	T	K	Q	E	I	I	C	S
Query Conservation																								.																										.
Alig confidence																								.																										.																					.
Template Conservation																																																																							.
Template Sequence		P	Q	L	F	S	Q	M	P	I	R	K	I	R	S	L	G	G	K	L	G	A	S	V	I	E	I	L	G	I	E	Y	M	G	E	L	T	Q	F	T	E	S	Q	L	Q	S	H	F	G	E	K	N	G	S	W	L	Y	A	M	C	R	G	I	E	H	D	P	V	K	P	.	R	Q	L	P	K	T	I	G	C	S
Template Known Secondary structure							T		B	G	G	G	S	T	T		S	S											T			B	G	G	G	G	G	G	S																					T	T	T									.	B		S		S
Template Predicted Secondary structure																																																																							.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.
		251	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.					.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure					.	.																													.	.	.	.
Query SS confidence					.	.																													.	.	.	.
Query Sequence		R	S	F	.	.	G	E	R	I	T	D	Y	P	S	M	R	Q	A	I	C	S	Y	A	A	R	A	A	E	K	L	R	S	E	.	.	.	.	H	Q	Y	C	R	F	I	S	T	F	I	K	T	S	P	F	A	L	N	E	P	Y	Y	G	N	S	A	S	V	K	L	L	T	P	T	Q	D	S	R	D	I	I	N
Query Conservation					.	.																													.	.	.	.
Alig confidence					.	.																													.	.	.	.																			.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		K	N	F	P	G	K	T	A	L	A	T	R	E	Q	V	Q	W	W	L	L	Q	L	A	Q	E	L	E	E	R	L	T	K	D	R	N	D	N	D	R	V	A	T	Q	L	V	V	S	I	R	V	Q	G	D	K	R	.	.	.	.	.	L	S	S	L	R	R	C	C	A	L	T	R	Y	D	A	H	K	M	S	H
Template Known Secondary structure						G	G	G	S																														S													T	T			S	.	.	.	.	.	S		S
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.						.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		A	A	T	R	S	L	D	A	I	W	Q	A	G	H	.	.	.	.	R	Y	Q	K	A	G	V	M	L	G	D	F	F	S
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.
Template Conservation
Template Sequence		D	A	F	T	V	I	K	N	C	N	T	S	G	T	E	W	S	P	P	L	T	M	L	F	L	C	A	T	K	F	S	A
Template Known Secondary structure								G	G	G
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.