Job Description P04152 Confidence 100.00% Date Thu Jan 5 10:58:12 GMT 2012 Rank 1 Aligned Residues 345 % Identity 23% Template c3gqcB_ PDB info PDB header:transferase/dna Chain: B: PDB Molecule:dna repair protein rev1; PDBTitle: structure of human rev1-dna-dntp ternary complex Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.																																	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	F	A	L	C	D	V	N	A	F	Y	A	S	C	E	T	V	F	R	P	D	L	W	G	K	P	V	V	V	L	S	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	C	V	I	A	R	N	A	E	A	K	A	L	G
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	I	M	H	V	D	M	D	C	F	F	V	S	V	G	I	R	N	R	P	D	L	K	G	K	P	V	A	V	T	S	N	R	G	T	G	R	A	P	L	R	P	G	A	N	P	Q	L	E	W	Q	Y	Y	Q	N	K	A	N	G	I	D	S	V	L	S	R	A	E	I	A	S	C	S	Y	E	A	R	Q	L	G
Template Known Secondary structure									T	T							T	T	T		T	T	S	T	T	S						S	S		S	S		B					T	T											T	T				T	T	G	G	G	B				B										T	T	T
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		V	K	M	G	D	P	W	F	K	Q	K	D	L	F	R	R	C	G	V	V	C	F	S	S	N	Y	E	L	Y	A	D	M	S	N	R	V	M	S	T	L	E	E	L	S	P	R	V	E	I	Y	S	I	D	E	A	F	C	D	L	T	G	V	R	N	C	R	.	.	D	L	T	D	F	G	R	E	I	R	A	T
Query Conservation																																																																				.	.
Alig confidence																		.	.																																																	.	.
Template Conservation																		.	.
Template Sequence		I	K	N	G	M	F	F	G	H	A	K	Q	L	C	P	N	.	.	L	Q	A	V	P	Y	D	F	H	A	Y	K	E	V	A	Q	T	L	Y	E	T	L	A	S	Y	T	H	N	I	E	A	V	S	C	D	E	A	L	V	D	I	T	E	I	L	A	E	T	K	L	T	P	D	E	F	A	N	A	V	R	M	E
Template Known Secondary structure				T	T		B									T	T	.	.																								T	T		S							T	T												T	T	T
Template Predicted Secondary structure																		.	.
Template SS confidence
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.			.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	Q	R	T	H	L	T	V	G	V	G	I	A	Q	T	K	T	L	A	K	L	A	N	H	A	A	K	K	W	Q	R	Q	T	G	G	V	V	D	L	S	N	L	E	R	Q	R	K	L	M	S	A	L	P	V	D	D	V	W	G	I	G	R	R	I	S	K	K	L	D	A	M	G	I	K	T	V	L	D	L
Query Conservation
Alig confidence																																	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.
Template Sequence		I	K	D	Q	T	K	C	A	A	S	V	G	I	G	S	N	I	L	L	A	R	M	A	T	R	K	A	K	P	D	G	.	.	.	.	.	.	Q	Y	H	L	K	P	E	E	V	D	D	F	I	R	G	Q	L	V	T	N	L	P	G	V	G	H	S	M	E	S	K	L	A	S	L	G	I	K	T	C	G	D	L
Template Known Secondary structure							S									S	S													S	S		.	.	.	.	.	.																S	B	G	G	G	S	T	T											T	T	T			B
Template Predicted Secondary structure																																	.	.	.	.	.	.
Template SS confidence
		598	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.							.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		A	D	T	D	I	R	F	I	R	K	H	F	N	V	.	V	L	E	R	T	V	R	E	L	R	G	E	P	C	L	Q	L	E	E	F	A	P	T	K	Q	E	I	I	C	S	R	S	F	G	E	R	I	T	D	Y	P	S	M	R	Q	A	I	C	S	Y	A	A	R	A	A	E	K	L	R	S	E	H	Q	Y	C
Query Conservation																.
Alig confidence																.																				.
Template Conservation																																				.
Template Sequence		Q	Y	M	T	M	A	K	L	Q	K	E	F	G	P	K	T	G	Q	M	L	Y	R	F	C	R	G	L	D	D	R	P	V	R	T	.	E	K	E	R	K	S	V	S	A	E	I	N	Y	G	I	R	F	T	Q	P	K	E	A	E	A	F	L	L	S	L	S	E	E	I	Q	R	R	L	E	A	T	G	M	K	G
Template Known Secondary structure		T	T	S																					T	T	T									.													S	S				S	S																							T
Template Predicted Secondary structure																																				.
Template SS confidence
		672	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.		.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750
		286	.	.	.	290	.	.	.	.	.	.										.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.
Query Sequence		R	F	I	S	T	F	I	K	T	S	P	.	.	.	.	.	.	.	.	.	F	A	L	N	E	P	Y	Y	G	N	S	A	S	V	K	L	L	T	P	T	Q	D	S	R	D	I	I	N	A	A	T	R	S	L	D	A	I	W	Q	A	G	H	R	Y	Q	K	A	G	V	M	L	G	D	F	F	S	Q	G
Query Conservation													.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	R	L	T	L	K	I	M	V	R	K	P	G	A	P	V	E	T	A	K	F	G	G	H	G	I	C	D	N	I	A	R	T	V	T	L	D	Q	A	T	D	N	A	K	I	I	G	K	A	M	L	N	M	F	H	T	M	K	L	N	I	S	D	M	R	G	V	G	I	H	V	N	Q	L	V	P	T	N
Template Known Secondary structure													T	T	S		S	S		S	S	T	T				S																														T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		751	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions