Job Description P04152 Confidence 100.00% Date Thu Jan 5 10:58:12 GMT 2012 Rank 5 Aligned Residues 343 % Identity 19% Template c2aq4A_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna repair protein rev1; PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp. Resolution 2.32 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20							.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70
Predicted Secondary structure																						.	.	.	.	.	.													.																																			.	.	.
Query SS confidence																						.	.	.	.	.	.													.																																			.	.	.
Query Sequence		M	F	A	L	C	D	V	N	A	F	Y	A	S	C	E	T	V	F	R	P	.	.	.	.	.	.	D	L	W	G	K	P	V	V	V	L	S	N	.	N	D	G	C	V	I	A	R	N	A	E	A	K	A	L	G	V	K	M	G	D	P	W	F	K	Q	K	D	L	F	R	R	C	G	.	.	.	V	V	C	F
Query Conservation																						.	.	.	.	.	.													.																																			.	.	.
Alig confidence																						.	.	.	.	.	.													.																																.	.		.	.	.
Template Conservation																																																																								.	.
Template Sequence		I	I	F	H	I	D	F	D	C	F	F	A	T	V	A	Y	L	C	R	S	S	S	F	S	A	C	D	F	K	R	D	P	I	V	V	C	H	G	T	K	N	S	D	I	A	S	C	N	Y	V	A	R	S	Y	G	I	K	N	G	M	W	V	S	Q	A	E	K	M	L	P	.	.	N	G	I	K	L	I	S	L
Template Known Secondary structure									T	T	T	T							T			G	G	G	T	T			T	T	T	S						S		S	S	S		B		S									T	T			T	T		B						T	T			.	.	T	T
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.			.	.	.	430	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																																							.
Query SS confidence																									.	.																																							.
Query Sequence		S	S	N	Y	E	L	Y	A	D	M	S	N	R	V	M	S	T	L	E	E	L	S	P	.	.	R	V	E	I	Y	S	I	D	E	A	F	C	D	L	T	G	V	R	N	C	R	D	L	T	D	F	G	R	E	I	R	A	T	V	L	Q	R	T	.	H	L	T	V	G	V	G	I	A	Q	T	K	T	L	A	K
Query Conservation																									.	.																																							.
Alig confidence																									.	.																					.	.																	.
Template Conservation																																															.	.
Template Sequence		P	Y	T	F	E	Q	F	Q	L	K	S	E	A	F	Y	S	T	L	K	R	L	N	I	F	N	L	I	L	P	I	S	I	D	E	A	V	C	V	R	I	I	P	D	T	L	.	.	N	A	R	L	C	E	E	I	R	Q	E	I	F	Q	G	T	N	G	C	T	V	S	I	G	C	S	D	S	L	V	L	A	R
Template Known Secondary structure																						T	T			S							T	T													.	.																	S	S									S	S
Template Predicted Secondary structure																																															.	.
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.			480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.
Predicted Secondary structure																																																					.	.										.													.
Query SS confidence																																																					.	.										.													.
Query Sequence		L	A	N	H	A	A	K	K	W	Q	R	Q	T	G	G	V	V	D	L	S	N	L	E	R	Q	R	K	L	M	S	A	L	P	V	D	D	V	W	G	I	G	R	R	I	S	K	K	L	D	A	M	.	.	G	I	K	T	V	L	D	L	A	.	D	T	D	I	R	F	I	R	K	H	F	N	.	V	V	L	E
Query Conservation																																																					.	.										.													.
Alig confidence											.	.	.	.	.																																						.	.										.													.
Template Conservation											.	.	.	.	.
Template Sequence		L	A	L	K	M	A	K	P	N	.	.	.	.	.	G	Y	N	I	T	F	K	S	N	L	S	E	E	F	W	S	S	F	K	L	D	D	L	P	G	V	G	H	S	T	L	S	R	L	E	S	T	F	D	S	P	H	S	L	N	D	L	R	K	R	Y	T	L	D	A	L	K	A	S	V	G	S	K	L	G	M
Template Known Secondary structure									S	S	.	.	.	.	.							G	G	G							T	T			G	G	G	S	T	T													T	T				S																			S	S
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		519	520	.	.	.	.	.	.	.						.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.							.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.																																																			.	.	.
Query SS confidence																							.	.	.	.	.	.																																																			.	.	.
Query Sequence		R	T	V	R	E	L	R	G	E	P	C	L	Q	L	E	E	F	A	P	T	K	.	.	.	.	.	.	Q	E	I	I	C	S	R	S	F	G	E	R	I	T	D	Y	P	S	M	R	Q	A	I	C	S	Y	A	A	R	A	A	E	K	L	R	S	E	H	Q	Y	C	R	F	I	S	T	F	I	K	T	.	.	.
Query Conservation																							.	.	.	.	.	.																																																			.	.	.
Alig confidence																							.	.	.	.	.	.																																																			.	.	.
Template Conservation
Template Sequence		K	I	H	L	A	L	Q	G	Q	D	D	E	E	S	L	K	I	L	Y	D	P	K	E	V	L	Q	R	K	S	L	S	I	D	I	N	W	G	I	R	F	K	N	I	T	Q	V	D	L	F	I	E	R	G	C	Q	Y	L	L	E	K	L	N	E	I	N	K	T	T	S	Q	I	T	L	K	L	M	R	R	C	K
Template Known Secondary structure							T	T	T																		S										S	S				S	S																						T	T															T
Template Predicted Secondary structure
Template SS confidence
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
								295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	S	P	F	A	L	N	E	P	Y	Y	G	N	S	A	S	V	K	L	L	T	P	T	Q	D	S	R	D	I	I	N	A	A	T	R	S	L	D	A	I	W	Q	A	G	H	R	Y	Q	K	A	G	V	M	L	G	D	F	F	S
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	P	I	E	P	P	K	Y	M	G	M	G	R	C	D	S	F	S	R	S	S	R	L	G	I	P	T	N	E	F	G	I	I	A	T	E	M	K	S	L	Y	R	T	L	G	C	P	P	M	E	L	R	G	L	A	L	Q	F	N	K	L	V	D
Template Known Secondary structure		T	S		S	S		S	S	T	T				S																																T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		674	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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