Job Description P04152 Confidence 100.00% Date Thu Jan 5 10:58:12 GMT 2012 Rank 4 Aligned Residues 327 % Identity 25% Template c1t94B_ PDB info PDB header:replication Chain: B: PDB Molecule:polymerase (dna directed) kappa; PDBTitle: crystal structure of the catalytic core of human dna2 polymerase kappa Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	A	L	C	D	V	N	A	F	Y	A	S	C	E	T	V	F	R	P	D	L	W	G	K	P	V	V	V	L	S	N	N	D	G	C	V	I	A	R	N	A	E	A	K	A	L	G	V	K	M	G	D	P	W	F	K	Q	K	D	L	F	R	R	C	G	V	V	C	F	S	S	N	Y	E	L	Y	A	D	M
Query Conservation
Alig confidence																																	.	.																																.	.
Template Conservation																																	.	.																																.	.
Template Sequence		T	I	V	H	I	D	M	D	A	F	Y	A	A	V	E	M	R	D	N	P	E	L	K	D	K	P	I	A	V	G	S	.	.	M	S	M	L	S	T	S	N	Y	H	A	R	R	F	G	V	R	A	A	M	P	G	F	I	A	K	R	L	C	P	Q	.	.	L	I	I	V	P	P	N	F	D	K	Y	R	A	V
Template Known Secondary structure									T	T											G	G	G	T	T	S							.	.	T	T											T	T	T			S	S	S										T	T	.	.
Template Predicted Secondary structure																																	.	.																																.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.																						.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	N	R	V	M	S	T	L	E	E	L	S	P	R	V	E	I	Y	S	I	D	E	A	F	C	D	L	T	G	V	R	N	C	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	D	F	G	R	E	I	R	A	T	V	L	Q	R	T	H	L	T	V	G	V	G	I
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	K	E	V	K	E	I	L	A	D	Y	D	P	N	F	M	A	M	S	L	D	E	A	Y	L	N	I	T	K	H	L	E	E	R	Q	N	W	P	E	D	K	R	R	Y	F	I	K	Q	N	S	V	V	F	G	T	S	A	Q	E	V	V	K	E	I	R	F	R	I	E	Q	K	T	T	L	T	A	S	A	G	I
Template Known Secondary structure										T	T	T		T	T					S	S	S														T	T			G	G	G	G													S	S																S	S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		A	Q	T	K	T	L	A	K	L	A	N	H	A	A	K	K	W	Q	R	Q	T	G	G	V	V	D	L	S	N	L	.	.	E	R	Q	R	K	L	M	S	A	L	P	V	D	D	V	W	G	I	G	R	R	I	S	K	K	L	D	A	M	G	I	K	T	V	L	D	L	A	D	T	D	I	R	F	I	R	K	H
Query Conservation																																.	.
Alig confidence																				.	.	.	.	.	.							.	.
Template Conservation																				.	.	.	.	.	.
Template Sequence		A	P	N	T	M	L	A	K	V	C	S	D	K	N	K	P	N	G	.	.	.	.	.	.	Q	Y	Q	I	L	P	N	R	Q	A	V	M	D	F	I	K	D	L	P	I	R	K	V	S	G	I	G	K	V	T	E	K	M	L	K	A	L	G	I	I	T	C	T	E	L	Y	Q	Q	R	A	L	L	S	L	L	F
Template Known Secondary structure			S	S								T	T	T	T		S	S		.	.	.	.	.	.						S	S										T		B	G	G	G		T	T	S									G	G	G	T			B							T								S
Template Predicted Secondary structure																				.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.							.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	V	V	L	E	R	T	V	R	E	L	R	G	E	P	C	L	Q	L	E	E	F	A	P	T	K	Q	E	I	I	C	S	R	S	F	G	E	R	I	T	D	Y	P	S	M	R	Q	A	I	C	S	Y	A	A	R	A	A	E	K	L	R	S	E	H	Q	Y	C	R	F	I	S	T	F	I	K	T	S	P	F
Query Conservation
Alig confidence																								.	.	.	.												.
Template Conservation																								.	.	.	.												.
Template Sequence		S	E	T	S	W	H	Y	F	L	H	I	S	L	G	L	G	S	T	H	L	T	R	.	.	.	.	R	K	S	M	S	V	E	R	T	F	S	.	E	I	N	K	A	E	E	Q	Y	S	L	C	Q	E	L	C	S	E	L	A	Q	D	L	Q	K	E	R	L	K	G	R	T	V	T	I	K	L	K	N	V	N	F
Template Known Secondary structure														T	T				S	S				.	.	.	.												.																								T	T	S					S									T	T	S
Template Predicted Secondary structure																								.	.	.	.												.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.					410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		A	L	N	E	P	Y	Y	G	N	S	A	S	V	K	L	L	T	P	T	Q	D	S	R	D	I	I	N	A	A	T	R	S	L	D	A	I	W	Q	A	G	H	.	.	.	.	R	Y	Q	K	A	G	V	M	L	G	D	F
Query Conservation																																											.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																		.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	E	V	K	T	R	A	S	T	S	V	V	S	T	A	E	E	I	F	A	I	A	K	E	L	L	K	T	E	I	D	A	D	F	P	H	P	L	R	L	R	L	M	G	V	R	I	S	S	F
Template Known Secondary structure		.	.	.	.	.	.	.	.													S	T	T	T	T	T	T	T												S	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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