Job Description P04152 Confidence 100.00% Date Thu Jan 5 10:58:12 GMT 2012 Rank 9 Aligned Residues 339 % Identity 24% Template c1t3nB_ PDB info PDB header:replication/dna Chain: B: PDB Molecule:polymerase (dna directed) iota; PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		M	F	A	L	C	D	V	N	A	F	Y	A	S	C	E	T	V	F	R	P	D	L	W	G	K	P	V	V	V	L	S	N	N	D	G	C	V	I	A	R	N	A	E	A	K	A	L	G	V	K	M	G	D	P	W	F	K	Q	K	D	L	F	R	R	C	G	V	V	C	F	S	.	S	N	Y	E	L	Y	A	D
Query Conservation																																																																									.
Alig confidence																																	.	.																																.	.						.
Template Conservation																																	.	.																																.	.
Template Sequence		V	I	V	H	V	D	L	D	C	F	Y	A	Q	V	E	M	I	S	N	P	E	L	K	D	K	P	L	G	V	Q	Q	.	.	K	Y	L	V	V	T	C	N	Y	E	A	R	K	L	G	V	K	K	L	M	N	V	R	D	A	K	E	K	C	P	Q	.	.	L	V	L	V	N	G	E	D	L	T	R	Y	R	E
Template Known Secondary structure									T	T									T		G	G	G	T	T	S							.	.	T	T											S	S	S	S			T	T			G	G	G	G	G	S	S	T	T	.	.
Template Predicted Secondary structure																																	.	.																																.	.
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.			480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510			.	.	.	.	.	.	.	.	.	520	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																																				.	.	120	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	N	R	V	M	S	T	L	E	E	L	S	P	R	V	E	I	Y	S	I	D	E	A	F	C	D	L	T	G	V	R	N	C	R	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	G	R	E	I	R
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	S	Y	K	V	T	E	L	L	E	E	F	S	P	V	V	E	R	L	G	F	D	E	N	F	V	D	L	T	E	M	V	E	K	R	L	Q	Q	L	Q	S	D	E	L	S	A	V	T	V	S	G	H	V	Y	N	N	Q	S	I	N	L	L	D	V	L	H	I	R	L	L	V	G	S	Q	I	A	A	E	M	R
Template Known Secondary structure															S						T	T	T																T	S		S	S	G	G	G	G					S			T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		A	T	V	L	Q	R	T	H	L	T	V	G	V	G	I	A	Q	T	K	T	L	A	K	L	A	N	H	A	A	K	K	W	Q	R	Q	T	G	G	V	V	D	L	S	N	L	E	R	Q	R	K	L	M	S	A	L	.	P	V	D	D	V	W	G	I	G	R	R	I	S	K	K	L	D	A	M	G	I	K	T	V
Query Conservation																																																									.
Alig confidence																																			.	.	.	.	.	.																	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		E	A	M	Y	N	Q	L	G	L	T	G	C	A	G	V	A	S	N	K	L	L	A	K	L	V	S	G	V	F	K	P	N	Q	.	.	.	.	.	.	Q	T	V	L	L	P	E	S	C	Q	H	L	I	H	S	L	N	H	I	K	E	I	P	G	I	G	Y	K	T	A	K	C	L	E	A	L	G	I	N	S	V
Template Known Secondary structure																		S	S									T	S	S	T	T	T		.	.	.	.	.	.						G	G	G						T	T		S	S	G	G	G	S	T	T												T	T			S
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.							.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		L	D	L	A	D	T	D	I	R	F	I	R	K	H	F	N	V	.	V	L	E	R	T	V	R	E	L	R	G	E	P	C	L	Q	L	E	E	F	A	P	T	K	Q	E	I	I	C	S	R	S	F	G	E	R	I	T	D	Y	P	S	M	R	Q	A	I	C	S	Y	A	A	R	A	A	E	K	L	R	S	E	H
Query Conservation																			.
Alig confidence																			.																				.														.
Template Conservation																																							.														.
Template Sequence		R	D	L	Q	T	F	S	P	K	I	L	E	K	E	L	G	I	S	V	A	Q	R	I	Q	K	L	S	F	G	E	D	N	S	P	V	I	L	.	S	G	P	P	Q	S	F	S	E	E	D	S	F	.	K	K	C	S	S	E	V	E	A	K	N	K	I	E	E	L	L	A	S	L	L	N	R	V	C	Q	D	G
Template Known Secondary structure							S																						T	T									.			S		S			B						.	T	T				S	S	S		T																	S
Template Predicted Secondary structure																																							.														.
Template SS confidence
		679	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.		.	.	.	.	720	.	.	.	.	.	.	.	.		.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.								.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.			.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																															.	.	.	.	.	.	.																										.	.
Query SS confidence																															.	.	.	.	.	.	.																										.	.
Query Sequence		Q	Y	C	R	F	I	S	T	F	I	K	T	S	P	F	A	L	N	E	P	Y	Y	G	N	S	A	S	V	K	.	.	.	.	.	.	.	L	L	T	P	T	Q	D	S	R	D	I	I	N	A	A	T	R	S	L	D	A	I	W	Q	A	.	.	G	H	R	Y	Q	K	A	G	V	M	L	G	D	F	F
Query Conservation																															.	.	.	.	.	.	.																										.	.
Alig confidence																															.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence		R	K	P	H	T	V	R	L	I	I	R	R	Y	S	S	E	K	H	Y	G	R	E	S	R	Q	C	P	I	P	S	H	V	I	Q	K	L	G	T	G	N	Y	D	V	M	T	P	M	V	D	I	L	M	K	L	F	R	N	M	V	N	V	K	M	P	F	H	L	T	L	L	S	V	C	F	C	N	L	K
Template Known Secondary structure					S											S	S						B													T	T	T	S	S			T	T									T	T	T		S		S	S	S													B			S
Template Predicted Secondary structure
Template SS confidence
		757	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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