Job Description P04152 Confidence 100.00% Date Thu Jan 5 10:58:12 GMT 2012 Rank 3 Aligned Residues 333 % Identity 25% Template c1s97D_ PDB info PDB header:transferase/dna Chain: D: PDB Molecule:dna polymerase iv; PDBTitle: dpo4 with gt mismatch Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.
Query SS confidence																																.	.	.	.	.
Query Sequence		M	F	A	L	C	D	V	N	A	F	Y	A	S	C	E	T	V	F	R	P	D	L	W	G	K	P	V	V	V	L	.	.	.	.	.	S	N	N	D	G	C	V	I	A	R	N	A	E	A	K	A	L	G	V	K	M	G	D	P	W	F	K	Q	K	D	L	F	R	R	C	G	V	V	C	F	S	S	N	Y	E
Query Conservation																																.	.	.	.	.
Alig confidence																																.	.	.	.	.																																			.	.
Template Conservation																																																																							.	.
Template Sequence		I	V	L	F	V	D	F	D	Y	F	Y	A	Q	V	E	E	V	L	N	P	S	L	K	G	K	P	V	V	V	C	V	F	S	G	R	F	E	D	S	G	A	V	A	T	A	N	Y	E	A	R	K	F	G	V	K	A	G	I	P	I	V	E	A	K	K	I	L	P	N	.	.	A	V	Y	L	P	M	R	K	E
Template Known Secondary structure									T	T									S		G	G	G	T	T	S									S	S	S	T	T														T	T			T	T	S	B									T	T	.	.	S
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		L	Y	A	D	M	S	N	R	V	M	S	T	L	E	E	L	S	P	R	V	E	I	Y	S	I	D	E	A	F	C	D	L	T	G	V	R	N	C	R	D	.	L	T	D	F	G	R	E	I	R	A	T	V	L	Q	R	T	H	L	T	V	G	V	G	I	A	Q	T	K	T	L	A	K	L	A	N	H	A	A	K
Query Conservation																																										.
Alig confidence																																										.
Template Conservation
Template Sequence		V	Y	Q	Q	V	S	S	R	I	M	N	L	L	R	E	Y	S	E	K	I	E	I	A	S	I	D	E	A	Y	L	D	I	S	D	K	V	R	D	Y	R	E	A	Y	N	L	G	L	E	I	K	N	K	I	L	E	K	E	K	I	T	V	T	V	G	I	S	K	N	K	V	F	A	K	I	A	A	D	M	A	K
Template Known Secondary structure															T	T	T		S							T	T							T	T	T		S	S																													S	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		K	W	Q	R	Q	T	G	G	V	V	D	L	S	N	L	E	R	Q	R	K	L	M	S	A	L	P	V	D	D	V	W	G	I	G	R	R	I	S	K	K	L	D	A	M	G	I	K	T	V	L	D	L	A	D	T	D	I	R	F	I	R	K	H	F	N	V	V	L	.	E	R	T	V	R	E	L	R	G	E	P
Query Conservation																																																																						.
Alig confidence					.	.	.	.	.	.																																																												.
Template Conservation					.	.	.	.	.	.
Template Sequence		P	N	G	.	.	.	.	.	.	I	K	V	I	D	D	E	E	V	K	R	L	I	R	E	L	D	I	A	D	V	P	G	I	G	N	I	T	A	E	K	L	K	K	L	G	I	N	K	L	V	D	T	L	S	I	E	F	D	K	L	K	G	M	I	G	E	A	K	A	K	Y	L	I	S	L	A	R	D	E	Y
Template Known Secondary structure		S	S		.	.	.	.	.	.																S		T	T	S	S	T	T											T	T	T			S	T	T	T	T	T	S	S																						T	T
Template Predicted Secondary structure					.	.	.	.	.	.
Template SS confidence
		160	.	.							.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	Q	L	E	E	F	A	P	T	K	Q	E	I	I	C	S	R	S	F	G	E	R	I	T	D	Y	P	S	M	R	Q	A	I	C	S	Y	A	A	R	A	A	E	K	L	R	S	E	H	Q	Y	C	R	F	I	S	T	F	I	K	T	S	P	F	A	L	N	E	P	Y	Y	G	N	S	A	S	V	K	L	L
Query Conservation
Alig confidence								.	.																																										.	.															.	.	.	.	.	.
Template Conservation								.	.																																										.	.															.	.	.	.	.	.
Template Sequence		N	E	P	I	R	T	.	.	R	V	R	K	S	I	G	R	I	V	T	M	K	R	N	S	R	N	L	E	E	I	K	P	Y	L	F	R	A	I	E	E	S	Y	Y	K	L	D	K	R	I	.	.	P	K	A	I	H	V	V	A	V	T	E	D	L	D	.	.	.	.	.	.	I	V	S	R	G	R	T	F	P
Template Known Secondary structure								.	.																																						T	T			.	.											T	T	S		.	.	.	.	.	.									S
Template Predicted Secondary structure								.	.																																										.	.															.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.							.	.	.	.	.	300	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	T	Q	D	S	R	D	I	I	N	A	A	T	R	S	L	D	A	I	W	Q	A	G	H	R	Y	Q	K	A	G	V	M	L	G	D	F	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	G	I	S	K	E	T	A	Y	S	E	S	V	K	L	L	Q	K	I	L	E	E	D	E	R	K	I	R	R	I	G	V	R	F	S	K	F	I
Template Known Secondary structure		S																					S			S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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