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Job DescriptionP04152
Confidence100.00%DateThu Jan 5 10:58:12 GMT 2012
Rank11Aligned Residues326
% Identity23%Templatec1k1qA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:dbh protein; PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADM
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Template Sequence  IVIFVDFDYFFAQVEEVLNPQYKGKPLVVS. . . . . . VYSANYEARKLGVKAGMPIIKAMQIAPS. . AIYVPMRKPIYEAF
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BTTS
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Query Sequence  SNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR. . DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQR
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Template Sequence  SNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNG.
Template Known Secondary structure  TT
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TTTTTT
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SSTTTTT
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   85....90.........100.........110.........120.........130.........140.........150.........160...
 
   159160.........170.........180.........190.........200.........210......... 220.........230.......
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Query Sequence  QTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN. VVLERTVRELRGEPCLQL
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Template Sequence  . . . . . LGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPV
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GGGT
BSTT
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   164.....170.........180.........190.........200.........210.........220.........230........
 
   238.240.........250.........260.........270.........280.........290.........300.........310.......
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Query Sequence  EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQ
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Template Sequence  ENK. . SKIPHGRYLTLPYNTRDVKVI. . . LPYLKKAINEAYNKVNGIPMRITVIAIMEDLD. . . . . . ILSKGKKFKHGIS
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   239240. ........250.........260.. .......270.........280.........290.... .....300.......
 
   318.320.........330.... .....340.........350..
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Query Sequence  DSRDIINAATRSLDAIW. . QAGHRYQKAGVMLGDFFS
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Template Sequence  . IDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIII
Template Known Secondary structure  .TTT
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   308.310.........320.........330.........340...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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