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Job DescriptionP04152
Confidence100.00%DateThu Jan 5 10:58:12 GMT 2012
Rank6Aligned Residues336
% Identity21%Templatec1jihA_
PDB info PDB header:translationChain: A: PDB Molecule:dna polymerase eta; PDBTitle: yeast dna polymerase eta
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70
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Query Sequence  MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRCGVVCF. . . . . . . . . .
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Template Sequence  CIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQ. . WNSIIAVSYAARKYGISRMDTIQEALKKCSN. . LIPIHTAVFKKGED
Template Known Secondary structure 

TTTT

TTS
..TT
TTT

TTS

TT..


TT
S
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   25....30.........40.........50..... ....60.........70.........80...... ...90.........100
 
   71........80.........90.........100.........110..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN. . . . . . . . . . . . . .
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Template Sequence  FWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGD
Template Known Secondary structure  S

TT
STT
S
TTS


SSS


S
TT


S
BSSSS
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   101........110.........120.........130.........140.........150.........160.........170.........180
 
   113......120.........130.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CRDLTDFGREIRATVLQRTHLTV
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Template Sequence  LKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILALGSQVCKGIRDSIKDILGYTT
Template Known Secondary structure 
BT

S
TTSB




GGGGG



S

TT


S

S



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   181........190.........200.........210.........220.........230.........240.........250.........260
 
   136...140.........150.........160.........170....... ..180.........190........ .200......
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Query Sequence  GVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS. . ALPVDDVWGIGRRISKKLDAM. . . . . . . GIKTVLDL
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Template Sequence  SCGLSSTKNVCKLASNYKKPDA. . . . . . QTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVLDLPHENSIKHIRET
Template Known Secondary structure  SSTTT
SS
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GGGTSSS

GGGSGGGSSTT

SSS
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   261........270.........280.. .......290.........300.........310.........320.........330....
 
   207..210......... 220.........230.........240.........250... ......260....
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Query Sequence  ADTDIRFIRKHFN. . . . . . . . . . . . . . . . . . . . . VVLERTVRELRGEPCLQLEEFAPTKQEIICSRSF. GERITDYPSMR
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Template Sequence  WPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSS. RPVVKSMMSNKNLRGKSCNSIVDCI
Template Known Secondary structure  S
S
TSTT

TTT
SS
TT
TTT







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TTTT
S
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   335....340.........350.........360.........370.........380........ .390.........400.........410...
 
   265....270........ .280.........290.........300.........310.........320.........330........
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Query Sequence  QAICSYAARAAEKL. . . . . . RSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH
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Template Sequence  SWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEV. . . . YRKSGPVAYKGINFQSHELLKVGIKFVTDLDIKGK
Template Known Secondary structure  TT


TT

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SSSS
TS
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   414.....420.........430.........440.........450.... .....460.........470.........480.........
 
   339 340.........350.
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Query Sequence  R. . . . . YQKAGVMLGDFF
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Template Sequence  NKSYYPLTKLSMTITNFD
Template Known Secondary structure  SSS
SS
S
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   490.........500.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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