Job Description P57998 Confidence 97.60% Date Thu Jan 5 12:06:30 GMT 2012 Rank 3 Aligned Residues 114 % Identity 11% Template d1exqa_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Resolution 1.60

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.	.	110	.	.	.	.
Predicted Secondary structure																																																					.																	.	.	.	.
Query SS confidence																																																					.																	.	.	.	.
Query Sequence		C	A	E	M	D	E	Q	W	G	Y	V	G	A	K	S	R	Q	R	W	L	F	Y	A	Y	D	R	L	R	K	T	V	V	A	H	V	F	G	E	R	T	M	A	T	L	G	R	L	M	S	L	L	.	S	P	F	D	V	V	I	W	M	T	D	G	W	P	L	Y	.	.	.	.	E	S	R	L	K	G	K	L
Query Conservation																																																					.																	.	.	.	.
Alig confidence								.	.						.	.	.	.																																			.																	.	.	.	.
Template Conservation								.	.						.	.	.	.
Template Sequence		I	W	Q	L	D	C	.	.	T	H	L	E	G	.	.	.	.	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	W	P	V	K	T	I	H	T	D	N	G	S	N	F	T	G	A	T	V	R	A	A	C	D	W	A
Template Known Secondary structure								.	.				T	T	.	.	.	.									T	T	T	T								S	S	S	S															S											G	G	G	T	S
Template Predicted Secondary structure								.	.						.	.	.	.
Template SS confidence
		60	.	.	.	.	.			.	.	.	.	70					.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	I	S	K	R	Y	T	Q	R	I	E	R	Y	N	L	N	L	R	Q	H	L	A	R	L	G	R	K	S	L	S	F	S	K	S	V	E	L	H	D	K	V	I	G	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	K	Q	E	D	G	I	P	Y	V	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	H	L	K	T	A	V	Q	M	A	V	F	I	H	N	K
Template Known Secondary structure		T					S							S	S												G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions