Job Description P57998 Confidence 96.84% Date Thu Jan 5 12:06:30 GMT 2012 Rank 9 Aligned Residues 116 % Identity 21% Template c3kksB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																																											.																					.	.
Query SS confidence																																																											.																					.	.
Query Sequence		G	S	D	V	I	V	C	A	E	M	D	E	Q	W	G	Y	V	G	A	K	S	R	Q	R	W	L	F	Y	A	Y	D	R	L	R	K	T	V	V	A	H	V	F	G	E	R	T	M	A	T	L	G	R	L	M	S	L	L	.	S	P	F	D	V	V	I	W	M	T	D	G	W	P	L	Y	E	S	R	L	.	.
Query Conservation																																																											.																					.	.
Alig confidence						.	.	.						.	.						.	.	.	.																																			.																					.	.
Template Conservation						.	.	.						.	.						.	.	.	.
Template Sequence		G	S	H	L	.	.	.	W	Q	M	D	N	.	.	T	H	W	N	K	.	.	.	.	T	I	I	W	V	A	V	E	T	N	S	G	L	V	E	A	Q	V	I	P	E	E	T	A	L	Q	V	A	L	C	I	L	Q	L	I	Q	R	Y	T	V	L	H	L	H	S	D	N	G	P	C	F	T	A	H	R	I	E
Template Known Secondary structure						.	.	.						.	.				T	T	.	.	.	.									T	T	T	T								S	S	S																S			S						S						S
Template Predicted Secondary structure						.	.	.						.	.						.	.	.	.
Template SS confidence
		57	.	.	60				.	.	.	.	.			.	.	.	.	70					.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
											111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	K	G	K	L	H	V	I	S	K	R	Y	T	Q	R	I	E	R	Y	N	L	N	L	R	Q	H	L	A	R	L	G	R	K	S	L	S	F	S	K	S	V	E	L	H	D	K	V	I	G
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	C	K	Y	L	G	I	T	K	T	T	G	I	P	Y	N	P	Q	S	Q	G	V	V	E	R	A	H	R	D	L	K	D	R	L	A	A	Y	Q	G	D	C	E	T	V	E	A	A	L	S	L	A	L	V	S	L	N
Template Known Secondary structure							T	T						S	S		S																							G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions