Job Description P57998 Confidence 96.58% Date Thu Jan 5 12:06:30 GMT 2012 Rank 10 Aligned Residues 113 % Identity 13% Template c3f9kV_ PDB info PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd Resolution 3.20 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110								.
Predicted Secondary structure																																																								.																		.	.	.	.	.	.	.
Query SS confidence																																																								.																		.	.	.	.	.	.	.
Query Sequence		C	A	E	M	D	E	Q	W	G	Y	V	G	A	K	S	R	Q	R	W	L	F	Y	A	Y	D	R	L	R	K	T	V	V	A	H	V	F	G	E	R	T	M	A	T	L	G	R	L	M	S	L	L	S	P	F	.	D	V	V	I	W	M	T	D	G	W	P	L	Y	E	S	R	L	.	.	.	.	.	.	.	K
Query Conservation																																																								.																		.	.	.	.	.	.	.
Alig confidence								.	.					.	.	.	.																																							.																		.	.	.	.	.	.	.
Template Conservation								.	.					.	.	.	.
Template Sequence		T	W	Q	M	D	C	.	.	T	H	L	E	.	.	.	.	G	K	I	I	I	V	A	V	H	V	A	S	G	F	I	E	A	E	V	I	P	Q	E	S	G	R	Q	T	A	L	F	L	L	K	L	A	S	R	W	P	I	T	H	L	H	T	D	N	G	A	N	F	T	S	Q	E	V	K	M	V	A	W	W	I
Template Known Secondary structure								.	.				T	.	.	.	.	T									T	T	T	T								S	S															T	T	S											T	T	T	T
Template Predicted Secondary structure								.	.					.	.	.	.
Template SS confidence
		60	.	.	.	.	.			.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		112	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		G	K	L	H	V	I	S	K	.	.	.	.	R	Y	T	Q	R	I	E	R	Y	N	L	N	L	R	Q	H	L	A	R	L	G	R	K	S	L	S	F	S	K	S	V	E	L	H	D	K	V	I	G
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.
Template Conservation
Template Sequence		G	I	E	Q	S	F	G	V	P	Y	N	P	Q	S	Q	G	V	V	E	A	M	N	H	H	L	K	N	Q	I	S	R	I	R	E	Q	A	N	T	I	E	T	I	V	L	M	A	V	H	C	M	N
Template Known Secondary structure		T						S	S		S	S	S	T	T	T	T																	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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