Job Description P0AFF0 Confidence 4.43% Date Thu Jan 5 11:26:04 GMT 2012 Rank 33 Aligned Residues 113 % Identity 12% Template d1oedc_ SCOP info Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Resolution 4.0

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	P	L	L	I	V	G	L	T	V	V	V	V	M	L	S	I	A	W	R	R	N	H	F	L	N	A	T	L	S	V	I	G	L	N	A	A	L	V	S	L	W	F	V	G	Q	A	G	A	M	D	V	T	P	L	M	R	V	D	G	F	A	M	L	Y	T	G	L	V	L	L	A	S	L	A	T	C	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	P	C	V	L	I	S	F	L	A	S	L	A	F	Y	L	P	A	E	S	G	E	K	M	S	T	A	I	S	V	L	L	A	Q	A	V	F	L	L	L	T	S	Q	R	L	P	E	T	A	L	A	V	P	L	I	G	K	Y	L	M	F	I	M	S	L	V	T	G	V	I	V	N	C	G	I	V	L	N	F
Template Known Secondary structure																							T	T																														S				T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	P	W	L	E	G	Y	N	D	N	K	D	E	F	Y	L	L	V	L	I	A	A	L	G	G	I	L	L	A	N	A	N	H	L
Query Conservation
Alig confidence					.	.
Template Conservation					.	.
Template Sequence		H	F	R	.	.	T	G	Q	T	I	D	R	L	S	M	F	I	I	T	P	V	M	V	L	G	T	I	F	I	F	V	M	G	N	F
Template Known Secondary structure					.	.				S
Template Predicted Secondary structure					.	.
Template SS confidence
		313	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions