Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFF0
Confidence54.72%DateThu Jan 5 11:26:04 GMT 2012
Rank4Aligned Residues87
% Identity21%Templatec3rkoK_
PDB info PDB header:oxidoreductaseChain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   102.......110.........120.........130.........140... ......150.........160.........170........
Predicted Secondary structure 
...



Query SS confidence 









































. . .


































Query Sequence  KDEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLV. . . GYAFRQKRSLEASIKYTILSAAASSFLLFGMALVY
Query Conservation        
  
   
      
  
    
  
   
    

...           

 

 
   

   

 

   
Alig confidence 









































...


































Template Conservation     
     

 


 
 
  



 


 



 




  
          



 
  



 

 

 


 
   
Template Sequence  QHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLH
Template Known Secondary structure 

BTT
STT
Template Predicted Secondary structure 




Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   179180........
Predicted Secondary structure 



Query SS confidence 









Query Sequence  AQSGDLSFVA
Query Conservation     

     
Alig confidence 









Template Conservation 
  

 

  
Template Sequence  RRRQNLNIDS
Template Known Secondary structure  TT
SS
BGGG
Template Predicted Secondary structure 



Template SS confidence 









   85....90....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions