Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFF0
Confidence6.56%DateThu Jan 5 11:26:04 GMT 2012
Rank12Aligned Residues12
% Identity25%Templatec1ceuA_
PDB info PDB header:viral proteinChain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   222.......230...
Predicted Secondary structure 

Query SS confidence 











Query Sequence  PFHLWTPDVYQG
Query Conservation 


 


 
   
Alig confidence 











Template Conservation 
  

  
 


Template Sequence  PYNDWTLELLEE
Template Known Secondary structure  TTS
Template Predicted Secondary structure 
Template SS confidence 











   14.....20.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions