Job Description P39369 Confidence 100.00% Date Thu Jan 5 12:00:01 GMT 2012 Rank 1 Aligned Residues 135 % Identity 19% Template c2wjyA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form Resolution 2.50 Å

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		3	.	.	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		Y	L	H	I	D	G	R	G	M	K	.	P	N	G	G	S	R	H	N	P	L	E	A	E	T	I	A	A	W	L	V	A	H	K	D	D	I	E	R	H	Y	G	E	P	L	Y	K	V	V	G	V	V	T	P	F	S	A	Q	V	N	A	I	K	M	S	L	R	K	L	E	I	N	G	K	D	E	Q	G	L	L
Query Conservation												.
Alig confidence												.																									.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.
Template Sequence		F	Y	V	T	Q	G	Q	E	E	I	A	S	S	G	T	S	Y	L	N	R	T	E	A	A	N	V	E	K	I	T	T	K	L	L	K	.	.	.	.	.	.	A	G	A	K	P	D	Q	I	G	I	I	T	P	Y	E	G	Q	R	S	Y	L	V	Q	Y	M	Q	F	S	G	S	L	H	T	K	L	Y	Q	E	V
Template Known Secondary structure													S	S	B	S																					.	.	.	.	.	.	T	T			G	G	G						S																	S	S							T	S
Template Predicted Secondary structure																																					.	.	.	.	.	.
Template SS confidence
		748	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.							.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	G	T	V	H	S	L	Q	G	A	E	R	A	I	V	L	F	S	P	V	Y	S	K	H	E	D	G	R	F	L	D	S	N	S	T	I	L	N	V	A	V	S	R	A	K	D	S	F	L	V	F	G	D	M	D	L	I	E	M	Q	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	A	S	V	D	A	F	Q	G	R	E	K	D	F	I	I	L	S	C	V	R	A	N	E	H	Q	G	I	G	F	L	N	D	P	R	R	L	N	V	A	L	T	R	A	R	Y	G	V	I	I	V	G	N	P	K	A	L	S	K	Q	P
Template Known Secondary structure						G	G	G	G	T	T														S						G	G	G	T										T	S															T	S	S
Template Predicted Secondary structure
Template SS confidence
		822	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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