Job Description P39369 Confidence 95.58% Date Thu Jan 5 12:00:01 GMT 2012 Rank 31 Aligned Residues 35 % Identity 20% Template c1nopB_ PDB info PDB header:hydrolase/dna Chain: B: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure of human tyrosyl-dna phosphodiesterase2 (tdp1) in complex with vanadate, dna and a human3 topoisomerase i-derived peptide Resolution 2.30 Å

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		280	.	.	.	.	.	.	.	.	.	290							.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.												310	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	H	S	K	I	V	I	E	D	E	E	.	.	.	.	.	.	L	L	C	V	G	S	F	N	W	F	S	A	T	R	E	D	K	Y	Q	.	.	.	.	.	.	.	.	.	.	.	R	Y	D	T	S	L	V	Y
Query Conservation													.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.										.	.	.								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.
Template Sequence		P	H	I	K	T	Y	M	R	P	S	P	D	F	S	K	I	A	W	F	L	V	T	S	A	N	L	.	.	.	S	K	A	A	W	G	A	L	E	K	N	G	T	Q	L	M	I	R	S	Y	E	L	G	V	L	F
Template Known Secondary structure		B										T	T	S	S									S			B	.	.	.	S									T	T	T	T						S	B
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.				.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions