Job Description P0A6X1 Confidence 99.67% Date Thu Jan 5 11:04:08 GMT 2012 Rank 9 Aligned Residues 233 % Identity 20% Template c3donA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from staphylococcus2 epidermidis Resolution 2.10 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.													.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.															.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.															.	.
Query Sequence		D	A	V	S	H	L	M	R	V	A	S	G	L	D	S	L	V	L	G	E	P	Q	I	L	G	Q	V	K	K	A	F	A	D	S	Q	K	G	H	M	K	A	.	.	.	.	.	.	.	.	.	.	.	.	S	E	L	E	R	M	F	Q	K	S	F	S	V	A	.	.	K	R	V	R	T	E	T	D	I	G	A
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.															.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation
Template Sequence		P	L	M	H	H	A	N	F	Q	S	L	N	L	E	N	T	Y	E	A	I	N	V	P	V	N	Q	F	Q	D	I	K	K	I	I	S	E	K	S	I	D	G	F	N	V	T	I	P	H	K	E	R	I	I	P	Y	L	D	D	I	N	E	Q	A	K	S	V	G	A	V	N	T	V	L	V	K	D	G	K	W	I
Template Known Secondary structure												T	T												G	G	G	G	G	G								T	T		S						T	T		T	T	T	T	G	G	G		S										T									T	T
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	V	S	V	A	F	A	A	C	T	L	A	R	Q	I	F	E	S	L	S	T	V	T	V	L	L	V	G	A	G	E	T	I	E	L	V	A	R	H	L	R	E	H	K	V	Q	K	M	I	I	A	N	R	T	R	E	R	A	Q	I	L	A	D	E	V	G	A	E	V	I	A	L	S	D	I	D	E	R	L
Query Conservation
Alig confidence																																																																					.	.
Template Conservation																																																																					.	.
Template Sequence		G	Y	N	T	D	G	I	G	Y	V	N	G	L	K	Q	I	Y	E	G	I	E	D	A	Y	I	L	I	L	G	A	G	G	A	S	K	G	I	A	N	E	L	Y	K	I	V	R	P	T	L	T	V	A	N	R	T	M	S	R	F	N	N	W	S	L	N	I	N	.	.	K	I	N	L	S	H	A	E	S	H	L
Template Known Secondary structure																		S	T	T	G	G	G									S												T	T			S							S		G	G	G	G	T	T			S				.	.										T	G
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	A	D	I	I	I	S	S	T	A	S	P	L	P	I	I	G	K	G	M	V	E	R	A	L	K	S	R	R	N	Q	P	M	L	L	V	D	I	A	V	P	R	D	V	E	P	E	V	G	K	L	A	N	A	Y	L	Y	S	V	D	D	L	Q	S	I	I	S	H	N	L	A	Q	R	K	A	A	A	V	E
Query Conservation
Alig confidence												.	.															.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.															.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	F	D	I	I	I	N	T	T	.	.	P	D	S	V	I	S	L	N	R	L	A	S	H	T	.	.	.	.	.	.	.	.	L	V	S	D	I	V	Y	N	P	Y	K	T	P	I	L	I	E	A	E	Q	R	G	N	P	I	Y	N	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G		S							.	.				S	S			T	T			S	S		.	.	.	.	.	.	.	.					S			S	S	S	S										T	T						T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.															.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.									.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	T	I	V	A	Q	E	T	S	E	F	M	A	W	L	R	A	Q	S	A	S	E	T	I	R	E	Y	R	S	Q	A	E	Q	V	R	D	E	L	T
Query Conservation
Alig confidence		.																			.	.	.
Template Conservation		.																			.	.	.
Template Sequence		.	D	M	F	V	H	Q	G	A	E	S	F	K	I	W	T	N	L	E	.	.	.	P	D	I	K	A	M	K	N	I	V	I	Q	K	L	K	G	E	L
Template Known Secondary structure		.																S	S		.	.	.															T	T		S
Template Predicted Secondary structure		.																			.	.	.
Template SS confidence
			234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions