Job Description P0A6X1 Confidence 99.07% Date Thu Jan 5 11:04:08 GMT 2012 Rank 39 Aligned Residues 156 % Identity 13% Template c1vi2B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase 2; PDBTitle: crystal structure of shikimate-5-dehydrogenase with nad Resolution 2.10 Å

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		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.													.	.	230	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	A	A	C	T	L	A	R	Q	I	F	E	S	L	S	T	V	T	V	L	L	V	G	A	G	E	T	I	E	L	V	A	R	H	L	R	E	H	K	V	Q	K	M	I	I	A	N	R	T	R	E	R	A	Q	I	L	A	D	E	V	G	.	.	.	.	.	.	.	.	.	.	.	.	A	E	V	I	A	L
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	G	H	I	R	A	I	K	E	S	G	F	D	I	K	G	K	T	X	V	L	L	G	A	G	G	A	S	T	A	I	G	A	Q	G	A	I	E	G	L	K	E	I	K	L	F	N	R	R	D	E	F	F	D	K	A	L	A	F	A	Q	R	V	N	E	N	T	D	C	V	V	T	V	T	D	L	A	D	Q
Template Known Secondary structure													T				T	T									S													T	T										S	S																	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.								.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.																														.
Query SS confidence																				.	.	.	.	.	.	.																														.
Query Sequence		S	D	I	D	E	R	L	R	E	A	D	I	I	I	S	S	T	A	.	.	.	.	.	.	.	S	P	L	P	I	I	G	K	G	M	V	E	R	A	L	K	S	R	R	N	Q	P	M	L	L	V	D	I	A	.	V	P	R	D	V	E	P	E	V	G	K	L	A	N	A	Y	L	Y	S	V	D	D	L	Q	S
Query Conservation																				.	.	.	.	.	.	.																														.
Alig confidence																				.	.	.	.	.	.	.																.	.	.	.	.	.	.	.							.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	F	A	E	A	L	A	S	A	D	I	L	T	N	G	T	K	V	G	X	K	P	L	E	N	E	S	L	V	N	D	I	S	L	L	H	P	G	L	.	.	.	.	.	.	.	.	L	V	T	E	C	V	Y	N	P	H	X	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K
Template Known Secondary structure										S		S						S	S	T	T	S	T	T		T	T			S		S		G	G	G			T	T		.	.	.	.	.	.	.	.								S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.									.	.	230	.	.	.	.	.	.	.	.	.																				240
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	S	H	N	L	A	Q	R	K	A	A	A	V	E	A	E	T	I	V	A	Q	E	T	S	E	F	M	A	W	L	R	A	Q	S	A	S	E	T	I	R	E	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	Q	Q	A	Q	Q	A	G	C	K	T	I	D	G	Y	G	X	L	L	W	Q	G	A	E	Q	F	T	L	W	T	G	K	D	F	P	L	E	Y	V	K	Q	V
Template Known Secondary structure										T																							S	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions