 |
Job Description | P0A6X1 | Confidence | 98.91% | Date | Thu Jan 5 11:04:08 GMT 2012 |
Rank | 47 | Aligned Residues | 121 |
% Identity | 20% | Template | c1pjcA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:protein (l-alanine dehydrogenase); |
PDBTitle: l-alanine dehydrogenase complexed with nad
|
Resolution | 2.00 Å |
|
 |
  |   |
177 | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | |
|
|
|
. | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | E | S | L | S | T | V | T | V | L | L | V | G | A | G | E | T | I | E | L | V | A | R | H | L | R | E | H | K | V | Q | K | M | I | I | A | N | R | T | R | E | R | A | Q | I | L | A | D | E | V | G | . |
. |
. |
. |
A | E | V | I | A | L | S | D | I | D | E | R | L | R | E | A | D | I | I | I | S | S | T | A | S |
Query Conservation |   |
|   |   |
|   |   |
|   |
|
|
|
|
|
|
|   |
|
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |
|   |
|
|
|   |   |
|
|   |   |
|
|   |   |   |
| . | . | . | . |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|
|
|
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |
|   |
|
|
|   |
|   |
|
|   |   |
|
|   |   |   |   |   |
|
|   | . |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |   |   |   |   |
Template Sequence |   |
V | P | G | V | K | P | G | K | V | V | I | L | G | G | G | V | V | G | T | E | A | A | K | M | A | V | G | L | G | A | . |
Q | V | Q | I | F | D | I | N | V | E | R | L | S | Y | L | E | T | L | F | G | S | R | V | E | L | L | Y | S | N | S | A | E | I | E | T | A | V | A | E | A | D | L | L | I | G | A | V | L | V |
Template Known Secondary structure |   |
B | T | T | B |
|
|
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| . |  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  | G | G | G | S |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |
|
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
162 | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | |
. | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |
  |
  |   |
253 | . | . | |
|
|
|
. | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . |
Predicted Secondary structure |   |
|
|
| . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | L | P | . |
. |
. |
. |
I | I | G | K | G | M | V | E | R | A | L | K | S | R | R | N | Q | P | M | L | L | V | D | I | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | P | R | D | V | E | P | E | V | G | K | L | A | N | A | Y | L | Y | S | V | D | D | L |
Query Conservation |   |
  |   |
| . | . | . | . |
|
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|   |
|   |   |
|   |   |
|   |
|   |   |
|
|
|
|
Alig confidence |   |
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |
|
|   |   |   |   |
|   |   |
| . | . | . | . | . |
|   |
|   |
|
|
|
|
|
|   |
|   |
|
|   |
|
|   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |
|
|   |   |   |   |
|   |   |
|
Template Sequence |   |
P | G | R | R | A | P | I | L | V | P | A | S | L | V | E | Q | M | . |
. |
. |
. |
. |
R | T | G | S | V | I | V | D | V | A | V | D | Q | G | G | C | V | E | T | L | H | P | T | S | H | T | Q | P | T | Y | E | V | F | G | V | V | H | Y | G | V | P | N | M |
Template Known Secondary structure |   |
T | T | S | S |
|
|
|
| B |
|  |  |  |  | T | T | S | . | . | . | . | . |
| T | T |
|  |  |  |  | T | T |
| T | T |
|
| S | B | T | T |
|
|
|
|
| S | S | S |
|  |  |  |  | T | T |  |  |  |  |
|
| S |
| G |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
241 | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|